Wall clock time and date at job start Mon Mar 30 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48503 * 109.47326 * 270.00173 * 3 2 1 5 5 H 1.48506 * 109.47237 * 30.00118 * 3 2 1 6 6 H 1.48500 * 109.47149 * 150.00088 * 3 2 1 7 7 C 1.38811 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99929 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.52556 * 34.29491 * 10 9 7 12 12 C 1.54804 * 110.58632 * 271.49691 * 10 9 7 13 13 C 1.54574 * 104.05197 * 240.38494 * 12 10 9 14 14 O 1.44687 * 105.06530 * 23.52047 * 13 12 10 15 15 C 1.42887 * 105.23139 * 321.32518 * 14 13 12 16 16 C 1.54016 * 111.53394 * 277.00956 * 15 14 13 17 17 C 1.55178 * 100.80248 * 271.95169 * 16 15 14 18 18 O 1.43778 * 105.26722 * 324.80546 * 17 16 15 19 19 C 1.43574 * 109.91108 * 24.20041 * 18 17 16 20 20 H 0.97005 * 120.00144 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00043 * 359.97438 * 9 7 2 22 22 H 1.09001 * 110.51042 * 359.02569 * 12 10 9 23 23 H 1.08996 * 110.51526 * 121.60702 * 12 10 9 24 24 H 1.09006 * 110.32251 * 142.41843 * 13 12 10 25 25 H 1.08995 * 110.32254 * 264.51636 * 13 12 10 26 26 H 1.09002 * 111.15038 * 29.84104 * 16 15 14 27 27 H 1.09002 * 111.15037 * 154.06254 * 16 15 14 28 28 H 1.08994 * 110.28557 * 205.85876 * 17 16 15 29 29 H 1.08998 * 110.27959 * 83.74932 * 17 16 15 30 30 H 1.08996 * 109.89059 * 238.00591 * 19 18 17 31 31 H 1.09003 * 110.02654 * 116.89848 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9790 -3.5664 0.5743 12 6 2.3641 -4.1086 -1.4503 13 6 1.6505 -5.4739 -1.5762 14 8 0.6063 -5.4463 -0.5750 15 6 1.1849 -4.7866 0.5526 16 6 2.0125 -5.7593 1.4134 17 6 0.9183 -6.3056 2.3685 18 8 0.0349 -5.1963 2.6062 19 6 0.1223 -4.2605 1.5208 20 1 -0.4850 0.8401 0.0004 21 1 0.3555 -2.3880 -0.0016 22 1 1.9552 -3.3963 -2.1669 23 1 3.4383 -4.2218 -1.5962 24 1 1.2185 -5.5850 -2.5709 25 1 2.3489 -6.2861 -1.3748 26 1 2.4384 -6.5576 0.8056 27 1 2.7895 -5.2315 1.9664 28 1 1.3660 -6.6393 3.3046 29 1 0.3774 -7.1245 1.8943 30 1 0.4168 -3.2813 1.8982 31 1 -0.8391 -4.1878 1.0123 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885406950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:06 Heat of formation + Delta-G solvation = -93.843846 kcal Electronic energy + Delta-G solvation = -15068.192253 eV Core-core repulsion = 12542.258196 eV Total energy + Delta-G solvation = -2525.934057 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.70098 -38.64582 -36.32772 -33.60151 -32.18645 -31.32446 -29.92735 -26.54029 -25.11814 -23.67580 -22.12066 -21.11205 -19.34695 -17.86152 -17.36855 -16.85737 -16.51817 -16.07464 -15.82017 -15.13374 -15.07574 -14.79070 -13.80868 -13.68506 -13.22383 -12.97897 -12.78458 -12.72550 -12.50509 -12.19574 -12.07936 -12.01090 -11.62881 -11.54579 -11.03708 -10.64998 -10.51867 -9.05945 -7.96147 -5.26770 1.47417 1.48751 1.57239 2.53349 2.77054 2.95864 3.35721 3.40029 3.70142 3.83023 3.98827 4.16737 4.24175 4.31145 4.45943 4.50780 4.54842 4.74107 4.77723 4.85024 4.93521 4.97761 5.01409 5.16219 5.32493 5.50347 5.89387 6.03809 6.24249 7.30462 8.01682 8.26031 9.26949 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038888 B = 0.009658 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.839246 B = 2898.485657 C = 3240.767631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.729 5.729 10 C 0.154 3.846 11 H 0.074 0.926 12 C -0.174 4.174 13 C 0.047 3.953 14 O -0.378 6.378 15 C 0.066 3.934 16 C -0.157 4.157 17 C 0.048 3.952 18 O -0.407 6.407 19 C 0.069 3.931 20 H 0.251 0.749 21 H 0.374 0.626 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -13.019 0.425 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.044 3.956 11 H 0.092 0.908 12 C -0.215 4.215 13 C -0.029 4.029 14 O -0.298 6.298 15 C 0.025 3.975 16 C -0.195 4.195 17 C -0.028 4.028 18 O -0.327 6.327 19 C -0.008 4.008 20 H 0.060 0.940 21 H 0.207 0.793 22 H 0.072 0.928 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.320 -12.951 0.599 14.423 hybrid contribution -0.072 1.323 -0.416 1.389 sum 6.248 -11.628 0.184 13.202 Atomic orbital electron populations 1.69830 1.06730 1.26138 1.59181 1.25585 0.96311 1.01179 1.03522 0.85137 0.77785 0.79459 0.77329 1.21533 1.22494 1.19123 1.19626 0.91572 0.84832 1.41406 0.90102 1.42655 1.05454 1.00625 1.88175 1.21584 0.94362 0.84956 0.94695 0.90819 1.23697 1.01685 0.97177 0.98925 1.23617 0.89966 0.96780 0.92523 1.88915 1.37233 1.78659 1.24952 1.23009 0.93514 0.92775 0.88211 1.23533 0.98266 0.99645 0.98072 1.23637 0.89843 0.88886 1.00414 1.88438 1.65770 1.34368 1.44095 1.22842 0.98223 0.92975 0.86743 0.94001 0.79333 0.92812 0.88954 0.88588 0.89373 0.86926 0.88565 0.87318 0.91521 0.90381 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.42 13.06 21.65 0.28 -59.14 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.24 -13.17 9.97 84.03 0.84 -12.34 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.73 -36.37 4.03 -319.75 -1.29 -37.66 16 10 C 0.15 5.90 3.17 45.66 0.14 6.05 16 11 H 0.07 2.71 7.53 -2.39 -0.02 2.69 16 12 C -0.17 -5.72 6.90 31.75 0.22 -5.50 16 13 C 0.05 1.29 7.35 72.52 0.53 1.83 16 14 O -0.38 -13.17 11.12 -148.98 -1.66 -14.83 16 15 C 0.07 2.27 0.85 -10.37 -0.01 2.27 16 16 C -0.16 -4.03 6.18 31.68 0.20 -3.84 16 17 C 0.05 1.27 7.79 72.73 0.57 1.84 16 18 O -0.41 -14.92 11.38 -148.98 -1.70 -16.61 16 19 C 0.07 2.76 6.06 72.01 0.44 3.20 16 20 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 21 H 0.37 20.56 6.65 -92.71 -0.62 19.94 16 22 H 0.05 2.09 7.97 -2.39 -0.02 2.07 16 23 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 25 H 0.09 1.81 7.54 -2.39 -0.02 1.79 16 26 H 0.11 2.25 7.35 -2.39 -0.02 2.23 16 27 H 0.10 2.32 7.72 -2.39 -0.02 2.31 16 28 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 3.57 6.86 -2.39 -0.02 3.56 16 31 H 0.06 2.38 8.07 -2.39 -0.02 2.36 16 Total: -1.00 -65.40 252.62 1.57 -63.83 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.51 Total: 26.89 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 3.39 Total: -10.21 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -1.00 Total: -96.79 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -3.35 Total: -31.44 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -65.40 1.57 -63.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885406950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.012 kcal (2) G-P(sol) polarization free energy of solvation -65.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds