Wall clock time and date at job start Mon Mar 30 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00407 * 2 1 4 4 H 1.48499 * 109.46728 * 270.00435 * 3 2 1 5 5 H 1.48504 * 109.46862 * 29.99831 * 3 2 1 6 6 H 1.48493 * 109.47034 * 149.99983 * 3 2 1 7 7 C 1.38812 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00165 * 163.51977 * 7 2 1 9 9 N 1.36939 * 120.00362 * 343.51879 * 7 2 1 10 10 C 1.47159 * 121.05561 * 333.37429 * 9 7 2 11 11 C 1.53272 * 108.48481 * 230.74678 * 10 9 7 12 12 O 1.43012 * 109.29085 * 307.89194 * 11 10 9 13 13 C 1.42783 * 114.12178 * 62.17932 * 12 11 10 14 14 H 1.08996 * 109.35141 * 57.07633 * 13 12 11 15 15 C 1.52793 * 109.97697 * 176.74559 * 13 12 11 16 16 O 1.42875 * 109.72252 * 63.74712 * 15 13 12 17 17 C 1.42993 * 113.87789 * 61.05975 * 16 15 13 18 18 C 1.53035 * 109.25497 * 298.29930 * 17 16 15 19 19 C 1.47302 * 121.06070 * 153.36973 * 9 7 2 20 20 H 1.08992 * 110.72929 * 8.38114 * 19 9 7 21 21 H 0.97002 * 119.99652 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.63666 * 111.05028 * 10 9 7 23 23 H 1.08996 * 109.80124 * 350.54278 * 10 9 7 24 24 H 1.08998 * 109.49991 * 187.95065 * 11 10 9 25 25 H 1.08998 * 109.50065 * 67.83636 * 11 10 9 26 26 H 1.09004 * 109.42214 * 183.82085 * 15 13 12 27 27 H 1.08999 * 109.42993 * 303.71145 * 15 13 12 28 28 H 1.09000 * 109.52834 * 178.35972 * 17 16 15 29 29 H 1.09001 * 109.49684 * 58.22125 * 17 16 15 30 30 H 1.08996 * 109.48895 * 298.01026 * 18 17 16 31 31 H 1.08997 * 109.48490 * 177.97017 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0570 -1.2213 -0.2659 9 7 1.3678 -2.3639 0.3354 10 6 0.1945 -2.3531 1.2235 11 6 0.4201 -3.3795 2.3392 12 8 0.7673 -4.6396 1.7588 13 6 1.9809 -4.6210 1.0068 14 1 2.7958 -4.2787 1.6446 15 6 2.3023 -6.0260 0.4996 16 8 1.2841 -6.4566 -0.4054 17 6 1.1550 -5.6317 -1.5664 18 6 0.7672 -4.2146 -1.1380 19 6 1.8290 -3.6641 -0.1809 20 1 2.7815 -3.5572 -0.6998 21 1 -0.4850 0.8401 0.0004 22 1 -0.6971 -2.6192 0.6558 23 1 0.0695 -1.3613 1.6581 24 1 -0.4933 -3.4878 2.9242 25 1 1.2294 -3.0416 2.9864 26 1 3.2634 -6.0147 -0.0146 27 1 2.3508 -6.7139 1.3437 28 1 0.3824 -6.0390 -2.2186 29 1 2.1050 -5.6034 -2.1000 30 1 -0.1991 -4.2386 -0.6342 31 1 0.7029 -3.5738 -2.0173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885407375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:59 Heat of formation + Delta-G solvation = -64.609424 kcal Electronic energy + Delta-G solvation = -15396.532226 eV Core-core repulsion = 12871.865869 eV Total energy + Delta-G solvation = -2524.666357 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.53072 -36.88352 -34.60633 -32.15692 -30.68631 -30.01871 -27.42955 -24.67270 -23.13826 -22.69864 -21.30948 -18.54880 -16.94758 -16.01256 -15.74952 -15.21253 -15.07933 -14.61423 -14.19988 -13.52884 -13.12666 -12.77405 -12.60271 -12.34010 -11.69275 -11.14308 -11.07998 -10.86524 -10.64378 -10.37290 -10.23087 -10.16305 -9.95187 -9.48949 -9.07394 -8.85727 -8.51536 -6.73733 -5.85195 -3.29047 3.32266 3.39506 3.41492 4.14704 4.39204 4.57097 5.23245 5.27296 5.40778 5.47791 5.53733 5.75703 5.78306 5.89718 5.94553 6.06508 6.18303 6.20869 6.38687 6.51081 6.58213 6.78666 6.99320 7.16123 7.53677 7.57975 7.69912 7.99534 8.32685 9.10460 9.73115 10.31624 11.22248 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045911 B = 0.010409 C = 0.009725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.734564 B = 2689.268143 C = 2878.562568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.141 3.859 11 C 0.036 3.964 12 O -0.378 6.378 13 C 0.046 3.954 14 H 0.056 0.944 15 C 0.074 3.926 16 O -0.379 6.379 17 C 0.062 3.938 18 C -0.161 4.161 19 C 0.144 3.856 20 H 0.069 0.931 21 H 0.255 0.745 22 H 0.028 0.972 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 -8.019 0.808 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.015 3.985 11 C -0.042 4.042 12 O -0.297 6.297 13 C -0.014 4.014 14 H 0.074 0.926 15 C -0.004 4.004 16 O -0.298 6.298 17 C -0.015 4.015 18 C -0.200 4.200 19 C 0.036 3.964 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.046 0.954 23 H 0.111 0.889 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.823 -8.148 0.870 8.667 hybrid contribution 0.635 1.549 -0.127 1.679 sum 3.458 -6.600 0.743 7.487 Atomic orbital electron populations 1.70031 1.05260 1.25626 1.53637 1.25051 0.95329 0.98412 1.00729 0.86275 0.79123 0.83478 0.77764 1.21328 1.21481 1.20463 1.19171 0.92391 0.84427 1.42457 0.91530 1.44194 1.33546 1.00865 1.52339 1.21407 0.89163 0.98142 0.89742 1.23338 0.98904 0.85377 0.96539 1.87804 1.41229 1.31973 1.68687 1.23030 0.87828 0.96095 0.94413 0.92610 1.22503 0.90415 0.94529 0.92912 1.87916 1.56905 1.51875 1.33057 1.22637 1.00115 0.91634 0.87151 1.22581 1.01960 0.94750 1.00755 1.21168 0.96317 0.86974 0.91907 0.91299 0.93515 0.95388 0.88912 0.90176 0.94295 0.92275 0.88984 0.89685 0.93888 0.91008 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.14 55.49 0.62 -25.25 16 2 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 3 Si 0.90 21.41 29.58 -169.99 -5.03 16.39 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.93 9.68 -15.06 -0.15 -7.08 16 8 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 9 N -0.59 -14.75 2.72 -164.10 -0.45 -15.20 16 10 C 0.14 3.43 4.96 -3.54 -0.02 3.41 16 11 C 0.04 0.75 6.99 37.30 0.26 1.01 16 12 O -0.38 -7.88 9.96 -40.21 -0.40 -8.28 16 13 C 0.05 0.88 2.92 -26.70 -0.08 0.81 16 14 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.07 1.18 6.51 37.05 0.24 1.42 16 16 O -0.38 -6.69 10.74 -40.21 -0.43 -7.13 16 17 C 0.06 1.01 6.84 37.18 0.25 1.27 16 18 C -0.16 -3.22 5.38 -26.61 -0.14 -3.36 16 19 C 0.14 3.07 2.83 -67.25 -0.19 2.88 16 20 H 0.07 1.42 8.00 -51.93 -0.42 1.01 16 21 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 22 H 0.03 0.73 7.35 -51.93 -0.38 0.35 16 23 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 24 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.60 6.80 -51.93 -0.35 1.25 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -29.91 246.18 -6.29 -36.20 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -4.40 Total: -0.80 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 0.10 Total: 0.36 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.17 Total: -40.45 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.83 Total: -15.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.91 -6.29 -36.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885407375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.411 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds