Wall clock time and date at job start Mon Mar 30 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 H 1.08996 * 109.47226 * 305.14628 * 3 2 1 5 5 C 1.50707 * 109.46888 * 185.14872 * 3 2 1 6 6 H 1.07993 * 119.99781 * 335.14446 * 5 3 2 7 7 C 1.37873 * 119.99537 * 155.14314 * 5 3 2 8 8 N 1.31514 * 120.00446 * 355.40660 * 7 5 3 9 9 Si 1.86800 * 119.99760 * 175.12890 * 7 5 3 10 10 H 1.48500 * 109.47343 * 89.99998 * 9 7 5 11 11 H 1.48502 * 109.47285 * 210.00091 * 9 7 5 12 12 H 1.48500 * 109.47174 * 330.00169 * 9 7 5 13 13 N 1.46501 * 109.47274 * 65.14924 * 3 2 1 14 14 C 1.46087 * 118.72679 * 239.73653 * 13 3 2 15 15 C 1.53192 * 109.82828 * 161.46346 * 14 13 3 16 16 O 1.43249 * 108.53734 * 49.50859 * 15 14 13 17 17 C 1.42966 * 112.98784 * 291.49007 * 16 15 14 18 18 C 1.33873 * 118.72714 * 59.99733 * 13 3 2 19 19 O 1.21279 * 118.83652 * 1.89175 * 18 13 3 20 20 H 1.08996 * 109.47437 * 60.00438 * 1 2 3 21 21 H 1.09004 * 109.47130 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46847 * 299.99659 * 1 2 3 23 23 H 1.09003 * 109.47342 * 239.99782 * 2 1 3 24 24 H 1.09004 * 109.47291 * 119.99868 * 2 1 3 25 25 H 0.96996 * 119.99865 * 4.95186 * 8 7 5 26 26 H 1.09006 * 109.39077 * 281.77723 * 14 13 3 27 27 H 1.08994 * 109.40043 * 41.50088 * 14 13 3 28 28 H 1.08998 * 109.79110 * 289.72622 * 15 14 13 29 29 H 1.08994 * 109.68406 * 169.23337 * 15 14 13 30 30 H 1.08997 * 109.41601 * 289.49134 * 17 16 15 31 31 H 1.09005 * 109.35587 * 169.66411 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9823 -0.8403 5 6 3.5416 1.4444 -0.1275 6 1 4.1118 0.5851 0.1930 7 6 4.1874 2.5432 -0.6533 8 7 3.4891 3.5522 -1.1267 9 14 6.0541 2.6023 -0.6863 10 1 6.5456 2.0152 -1.9586 11 1 6.5066 4.0131 -0.5847 12 1 6.5942 1.8256 0.4584 13 7 1.6555 2.0964 1.2533 14 6 0.8128 3.2882 1.1937 15 6 0.1619 3.5333 2.5587 16 8 1.1795 3.4756 3.5653 17 6 1.7154 2.1621 3.7428 18 6 2.0944 1.5818 2.4086 19 8 2.8233 0.6130 2.3779 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.5230 3.5558 -1.0412 26 1 1.4225 4.1493 0.9197 27 1 0.0346 3.1443 0.4443 28 1 -0.5883 2.7668 2.7528 29 1 -0.3084 4.5165 2.5700 30 1 0.9668 1.5261 4.2151 31 1 2.5990 2.2154 4.3789 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885408501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:10 Heat of formation + Delta-G solvation = -82.303748 kcal Electronic energy + Delta-G solvation = -15380.820047 eV Core-core repulsion = 12855.386407 eV Total energy + Delta-G solvation = -2525.433641 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86472 -37.09352 -35.40305 -32.61797 -31.94147 -29.45515 -27.57681 -25.47092 -23.49777 -22.89035 -20.56992 -18.44869 -17.18699 -16.74432 -15.84268 -15.32953 -14.59143 -14.09915 -13.96162 -13.73965 -13.08077 -12.90027 -12.72424 -12.41397 -12.16215 -11.28578 -11.19133 -10.98775 -10.75332 -10.66214 -10.19866 -10.18535 -10.05800 -9.56998 -8.88534 -8.61913 -8.22377 -7.38754 -6.41911 -4.12122 3.41378 3.48485 3.52219 3.66421 3.78340 4.23784 4.51211 4.99524 5.26720 5.36885 5.44247 5.53124 5.58196 5.81922 5.86936 5.87375 5.97646 6.07905 6.36094 6.53601 6.66190 6.81234 6.87131 7.10089 7.30621 7.81896 8.06862 8.39840 8.70447 8.82516 9.22116 9.58738 10.94876 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027723 B = 0.013528 C = 0.011922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.749448 B = 2069.248434 C = 2348.089772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.244 3.756 4 H 0.048 0.952 5 C -0.572 4.572 6 H 0.059 0.941 7 C 0.024 3.976 8 N -0.906 5.906 9 Si 1.070 2.930 10 H -0.287 1.287 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.582 5.582 14 C 0.076 3.924 15 C 0.046 3.954 16 O -0.377 6.377 17 C 0.044 3.956 18 C 0.481 3.519 19 O -0.537 6.537 20 H 0.043 0.957 21 H 0.039 0.961 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.267 0.733 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -0.421 5.291 9.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.147 3.853 4 H 0.066 0.934 5 C -0.611 4.611 6 H 0.078 0.922 7 C -0.181 4.181 8 N -0.542 5.542 9 Si 0.898 3.102 10 H -0.214 1.214 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.316 5.316 14 C -0.048 4.048 15 C -0.031 4.031 16 O -0.295 6.295 17 C -0.036 4.036 18 C 0.266 3.734 19 O -0.415 6.415 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.897 0.143 4.845 7.633 hybrid contribution -1.502 -0.904 0.400 1.798 sum -7.399 -0.761 5.245 9.101 Atomic orbital electron populations 1.21795 0.98286 0.99791 1.00381 1.21854 0.92865 0.99528 1.02483 1.19058 0.95954 0.88820 0.81512 0.93398 1.22233 0.91222 1.04191 1.43434 0.92249 1.25927 1.07096 0.92575 0.92515 1.70835 1.08719 1.32757 1.41916 0.83536 0.74265 0.75962 0.76433 1.21365 1.21095 1.21261 1.48957 1.48177 1.26481 1.07999 1.22077 0.94981 0.90674 0.97069 1.22982 0.89921 1.02632 0.87558 1.88110 1.55178 1.28546 1.57653 1.22921 1.00068 0.84268 0.96312 1.20432 0.81712 0.85122 0.86111 1.90621 1.35876 1.27809 1.87222 0.93784 0.94164 0.93951 0.92344 0.90776 0.92200 0.90990 0.91130 0.92799 0.87806 0.90841 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.80 37.16 0.36 -2.23 16 2 C -0.13 -2.85 5.23 -26.73 -0.14 -2.99 16 3 C 0.24 6.02 1.74 -69.08 -0.12 5.90 16 4 H 0.05 1.23 6.38 -51.93 -0.33 0.89 16 5 C -0.57 -16.24 7.13 -34.44 -0.25 -16.49 16 6 H 0.06 1.80 7.58 -52.49 -0.40 1.40 16 7 C 0.02 0.69 5.45 -17.82 -0.10 0.59 16 8 N -0.91 -26.39 13.63 55.43 0.76 -25.64 16 9 Si 1.07 26.01 29.91 -169.99 -5.08 20.92 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.58 -12.93 2.25 -168.04 -0.38 -13.31 16 14 C 0.08 1.40 6.26 -4.17 -0.03 1.37 16 15 C 0.05 0.68 6.91 37.26 0.26 0.94 16 16 O -0.38 -6.52 10.85 -35.23 -0.38 -6.90 16 17 C 0.04 0.77 6.98 35.84 0.25 1.02 16 18 C 0.48 10.77 6.99 -11.56 -0.08 10.69 16 19 O -0.54 -13.89 13.65 5.56 0.08 -13.81 16 20 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.73 7.76 -51.93 -0.40 0.33 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.07 1.78 5.96 -51.93 -0.31 1.47 16 25 H 0.27 7.53 6.10 -40.82 -0.25 7.28 16 26 H 0.07 1.48 7.89 -51.93 -0.41 1.07 16 27 H 0.07 1.16 8.09 -51.93 -0.42 0.73 16 28 H 0.05 0.71 8.10 -51.93 -0.42 0.28 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 254.81 15.07 3.84 3.84 Total: -1.00 -32.21 254.81 -5.28 -37.50 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.27 Total: -1.41 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 0.16 Total: -1.19 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.38 Total: -38.95 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.31 Total: -20.72 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.92 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.21 -5.28 -37.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885408501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.807 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds