Wall clock time and date at job start Mon Mar 30 2020 03:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 H 1.08996 * 109.47226 * 305.14628 * 3 2 1 5 5 C 1.50707 * 109.46888 * 185.14872 * 3 2 1 6 6 H 1.07993 * 119.99781 * 335.14446 * 5 3 2 7 7 C 1.37873 * 119.99537 * 155.14314 * 5 3 2 8 8 N 1.31514 * 120.00446 * 355.40660 * 7 5 3 9 9 Si 1.86800 * 119.99760 * 175.12890 * 7 5 3 10 10 H 1.48500 * 109.47343 * 89.99998 * 9 7 5 11 11 H 1.48502 * 109.47285 * 210.00091 * 9 7 5 12 12 H 1.48500 * 109.47174 * 330.00169 * 9 7 5 13 13 N 1.46501 * 109.47274 * 65.14924 * 3 2 1 14 14 C 1.46087 * 118.72679 * 239.73653 * 13 3 2 15 15 C 1.53192 * 109.82828 * 161.46346 * 14 13 3 16 16 O 1.43249 * 108.53734 * 49.50859 * 15 14 13 17 17 C 1.42966 * 112.98784 * 291.49007 * 16 15 14 18 18 C 1.33873 * 118.72714 * 59.99733 * 13 3 2 19 19 O 1.21279 * 118.83652 * 1.89175 * 18 13 3 20 20 H 1.08996 * 109.47437 * 60.00438 * 1 2 3 21 21 H 1.09004 * 109.47130 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46847 * 299.99659 * 1 2 3 23 23 H 1.09003 * 109.47342 * 239.99782 * 2 1 3 24 24 H 1.09004 * 109.47291 * 119.99868 * 2 1 3 25 25 H 0.96996 * 119.99865 * 4.95186 * 8 7 5 26 26 H 1.09006 * 109.39077 * 281.77723 * 14 13 3 27 27 H 1.08994 * 109.40043 * 41.50088 * 14 13 3 28 28 H 1.08998 * 109.79110 * 289.72622 * 15 14 13 29 29 H 1.08994 * 109.68406 * 169.23337 * 15 14 13 30 30 H 1.08997 * 109.41601 * 289.49134 * 17 16 15 31 31 H 1.09005 * 109.35587 * 169.66411 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9823 -0.8403 5 6 3.5416 1.4444 -0.1275 6 1 4.1118 0.5851 0.1930 7 6 4.1874 2.5432 -0.6533 8 7 3.4891 3.5522 -1.1267 9 14 6.0541 2.6023 -0.6863 10 1 6.5456 2.0152 -1.9586 11 1 6.5066 4.0131 -0.5847 12 1 6.5942 1.8256 0.4584 13 7 1.6555 2.0964 1.2533 14 6 0.8128 3.2882 1.1937 15 6 0.1619 3.5333 2.5587 16 8 1.1795 3.4756 3.5653 17 6 1.7154 2.1621 3.7428 18 6 2.0944 1.5818 2.4086 19 8 2.8233 0.6130 2.3779 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.5230 3.5558 -1.0412 26 1 1.4225 4.1493 0.9197 27 1 0.0346 3.1443 0.4443 28 1 -0.5883 2.7668 2.7528 29 1 -0.3084 4.5165 2.5700 30 1 0.9668 1.5261 4.2151 31 1 2.5990 2.2154 4.3789 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885408501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:09 Heat of formation + Delta-G solvation = -104.782052 kcal Electronic energy + Delta-G solvation = -15381.794780 eV Core-core repulsion = 12855.386407 eV Total energy + Delta-G solvation = -2526.408373 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49383 -38.61397 -37.24761 -34.53655 -33.69066 -30.91655 -29.25242 -27.19651 -25.22248 -24.59192 -22.26587 -20.16640 -19.04484 -18.35417 -17.36128 -16.88291 -16.14533 -15.77804 -15.66290 -15.55178 -14.99861 -14.56988 -14.24929 -14.08356 -13.69551 -13.00748 -12.78080 -12.67977 -12.44124 -12.30438 -12.05767 -11.88084 -11.75256 -11.18650 -10.92955 -10.61990 -10.05153 -9.22625 -8.64853 -6.35687 1.44781 1.52614 1.72938 1.80984 2.20661 2.49326 2.87827 3.24265 3.56629 3.96607 4.11754 4.18331 4.26507 4.30825 4.39896 4.45718 4.51769 4.74450 4.78134 4.88595 5.05201 5.12035 5.17060 5.47913 5.77668 5.99058 6.04624 6.19116 6.61138 6.89709 7.39103 7.48856 8.73525 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027723 B = 0.013528 C = 0.011922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.749448 B = 2069.248434 C = 2348.089772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.246 3.754 4 H 0.036 0.964 5 C -0.589 4.589 6 H 0.028 0.972 7 C -0.018 4.018 8 N -0.925 5.925 9 Si 1.106 2.894 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.290 1.290 13 N -0.587 5.587 14 C 0.072 3.928 15 C 0.052 3.948 16 O -0.386 6.386 17 C 0.056 3.944 18 C 0.466 3.534 19 O -0.582 6.582 20 H 0.054 0.946 21 H 0.062 0.938 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.263 0.737 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.111 0.889 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 0.067 6.222 11.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.146 3.854 4 H 0.054 0.946 5 C -0.629 4.629 6 H 0.047 0.953 7 C -0.218 4.218 8 N -0.562 5.562 9 Si 0.930 3.070 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.216 1.216 13 N -0.319 5.319 14 C -0.052 4.052 15 C -0.025 4.025 16 O -0.304 6.304 17 C -0.023 4.023 18 C 0.253 3.747 19 O -0.464 6.464 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.158 0.842 30 H 0.129 0.871 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.541 0.654 5.777 9.522 hybrid contribution -1.050 -1.076 0.108 1.508 sum -8.592 -0.423 5.886 10.423 Atomic orbital electron populations 1.21666 0.94454 1.01618 1.01246 1.21738 0.96226 0.97480 1.00865 1.18847 0.93926 0.90343 0.82262 0.94637 1.22378 0.93425 1.03267 1.43783 0.95314 1.26989 1.10333 0.92326 0.92182 1.70909 1.08711 1.33240 1.43359 0.83047 0.70645 0.76218 0.77094 1.19321 1.20450 1.21645 1.48598 1.48649 1.27403 1.07251 1.22288 0.94560 0.87796 1.00535 1.23205 0.89316 1.05687 0.84266 1.88114 1.55960 1.28250 1.58103 1.22863 1.01667 0.84815 0.92971 1.21407 0.80800 0.84673 0.87780 1.90602 1.37807 1.29892 1.88097 0.92714 0.91906 0.93168 0.93401 0.92988 0.92612 0.93773 0.89101 0.90040 0.84212 0.87139 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.80 71.98 0.71 -3.75 16 2 C -0.12 -5.55 5.23 30.59 0.16 -5.39 16 3 C 0.25 12.29 1.74 44.25 0.08 12.37 16 4 H 0.04 1.85 6.38 -2.39 -0.02 1.83 16 5 C -0.59 -34.54 7.13 25.60 0.18 -34.35 16 6 H 0.03 1.81 7.58 -2.91 -0.02 1.79 16 7 C -0.02 -1.02 5.45 84.65 0.46 -0.56 16 8 N -0.92 -54.59 13.63 21.45 0.29 -54.29 16 9 Si 1.11 53.20 29.91 68.60 2.05 55.25 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 13 N -0.59 -25.73 2.25 -804.46 -1.81 -27.54 16 14 C 0.07 2.50 6.26 86.52 0.54 3.04 16 15 C 0.05 1.32 6.91 72.05 0.50 1.82 16 16 O -0.39 -12.07 10.85 -148.98 -1.62 -13.69 16 17 C 0.06 1.82 6.98 71.13 0.50 2.32 16 18 C 0.47 20.56 6.99 87.69 0.61 21.18 16 19 O -0.58 -30.63 13.65 -3.03 -0.04 -30.67 16 20 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 22 H 0.05 1.59 7.76 -2.39 -0.02 1.58 16 23 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.05 2.54 5.96 -2.38 -0.01 2.53 16 25 H 0.26 15.13 6.10 -92.71 -0.57 14.56 16 26 H 0.04 1.79 7.89 -2.38 -0.02 1.77 16 27 H 0.09 2.77 8.09 -2.39 -0.02 2.75 16 28 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 29 H 0.14 2.61 8.14 -2.39 -0.02 2.60 16 30 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.13 3.87 8.14 -2.38 -0.02 3.85 16 Total: -1.00 -71.69 254.81 3.92 -67.77 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.31 Total: 6.51 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 3.74 Total: -3.34 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -1.52 Total: -81.83 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.66 Total: -44.36 kcal Atomic # 14 Polarization: 53.20 SS G_CDS: 2.05 Total: 55.25 kcal Total: -71.69 3.92 -67.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885408501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.013 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds