Wall clock time and date at job start Mon Mar 30 2020 03:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46890 * 2 1 4 4 H 1.08994 * 109.47116 * 57.14946 * 3 2 1 5 5 C 1.50698 * 109.46850 * 177.14868 * 3 2 1 6 6 H 1.08007 * 120.00049 * 115.98218 * 5 3 2 7 7 C 1.37870 * 120.00353 * 295.98034 * 5 3 2 8 8 N 1.31517 * 120.00081 * 352.21611 * 7 5 3 9 9 Si 1.86803 * 120.00510 * 172.22270 * 7 5 3 10 10 H 1.48498 * 109.46958 * 265.09924 * 9 7 5 11 11 H 1.48502 * 109.47113 * 25.09451 * 9 7 5 12 12 H 1.48496 * 109.47654 * 145.09751 * 9 7 5 13 13 N 1.46500 * 109.47162 * 297.14510 * 3 2 1 14 14 C 1.46093 * 118.72307 * 120.00137 * 13 3 2 15 15 C 1.53021 * 109.92024 * 161.62277 * 14 13 3 16 16 O 1.43250 * 108.67192 * 49.16219 * 15 14 13 17 17 C 1.42965 * 112.98381 * 291.63488 * 16 15 14 18 18 C 1.33871 * 118.73054 * 299.73499 * 13 3 2 19 19 O 1.21272 * 118.83595 * 1.90348 * 18 13 3 20 20 H 1.08996 * 109.47321 * 60.00083 * 1 2 3 21 21 H 1.09003 * 109.46806 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47006 * 300.00002 * 1 2 3 23 23 H 1.09000 * 109.47002 * 240.00495 * 2 1 3 24 24 H 1.08996 * 109.47321 * 119.99917 * 2 1 3 25 25 H 0.96999 * 120.00408 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.39564 * 281.75197 * 14 13 3 27 27 H 1.08993 * 109.39827 * 41.57492 * 14 13 3 28 28 H 1.09004 * 109.60236 * 168.91437 * 15 14 13 29 29 H 1.09000 * 109.60239 * 289.24338 * 15 14 13 30 30 H 1.09008 * 109.41086 * 169.70239 * 17 16 15 31 31 H 1.09000 * 109.41870 * 289.56025 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6355 1.9709 0.8633 5 6 3.5453 1.4431 0.0707 6 1 4.1243 1.8391 -0.7506 7 6 4.1834 0.9382 1.1836 8 7 3.4846 0.5981 2.2446 9 14 6.0406 0.7374 1.1849 10 1 6.3886 -0.6512 0.7904 11 1 6.6424 1.6918 0.2193 12 1 6.5674 1.0120 2.5459 13 7 1.6086 2.1130 -1.2291 14 6 0.7642 3.3003 -1.1219 15 6 0.8069 4.0905 -2.4316 16 8 0.5732 3.1881 -3.5194 17 6 1.6437 2.2610 -3.7155 18 6 2.0079 1.6172 -2.4067 19 8 2.6837 0.6103 -2.4185 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.9335 0.2425 3.0275 26 1 -0.2623 2.9971 -0.9155 27 1 1.1261 3.9298 -0.3090 28 1 0.0333 4.8584 -2.4208 29 1 1.7849 4.5581 -2.5449 30 1 1.3333 1.4943 -4.4254 31 1 2.5125 2.7887 -4.1089 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885408502.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:11 Heat of formation + Delta-G solvation = -98.010883 kcal Electronic energy + Delta-G solvation = -15215.441627 eV Core-core repulsion = 12689.326874 eV Total energy + Delta-G solvation = -2526.114753 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47892 -38.58284 -37.08301 -34.73737 -33.20353 -30.90282 -29.47345 -27.44132 -25.08134 -24.57120 -22.15351 -19.72795 -18.90028 -18.20043 -17.42873 -16.86144 -16.48528 -16.04180 -15.62555 -15.25382 -14.70344 -14.39831 -14.06936 -13.78838 -13.48520 -13.28687 -12.89224 -12.64953 -12.54219 -12.35525 -12.17535 -11.75409 -11.64517 -11.50553 -11.00642 -10.54047 -9.96875 -9.32455 -8.16920 -6.23156 1.33724 1.37966 1.45896 1.81424 2.22598 2.42386 2.91422 3.12307 3.57884 4.00991 4.18046 4.28548 4.42430 4.51114 4.52183 4.61630 4.67638 4.81310 4.88482 5.02467 5.19072 5.35650 5.37847 5.61678 5.79140 5.86858 6.04550 6.19063 6.75688 6.91433 7.34955 7.53363 8.89011 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.011406 C = 0.010343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.575344 B = 2454.249205 C = 2706.558777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.126 4.126 3 C 0.279 3.721 4 H 0.032 0.968 5 C -0.516 4.516 6 H 0.036 0.964 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.284 1.284 11 H -0.275 1.275 12 H -0.274 1.274 13 N -0.594 5.594 14 C 0.072 3.928 15 C 0.049 3.951 16 O -0.378 6.378 17 C 0.060 3.940 18 C 0.464 3.536 19 O -0.578 6.578 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.263 0.737 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.149 0.851 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 7.316 -7.556 12.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.177 3.823 4 H 0.050 0.950 5 C -0.555 4.555 6 H 0.055 0.945 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.776 3.224 10 H -0.211 1.211 11 H -0.199 1.199 12 H -0.200 1.200 13 N -0.326 5.326 14 C -0.051 4.051 15 C -0.028 4.028 16 O -0.296 6.296 17 C -0.020 4.020 18 C 0.252 3.748 19 O -0.459 6.459 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.167 0.833 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.541 6.772 -7.485 12.028 hybrid contribution 1.414 -0.449 0.616 1.606 sum -5.127 6.323 -6.870 10.652 Atomic orbital electron populations 1.21632 0.95857 1.00628 1.00526 1.21723 0.94678 0.99530 1.00588 1.18564 0.92944 0.89618 0.81206 0.95038 1.21425 0.92478 1.40109 1.01490 0.94517 1.25514 1.02156 0.95480 0.94946 1.70008 1.36809 1.44597 1.04083 0.85679 0.81212 0.78118 0.77392 1.21058 1.19938 1.19958 1.47883 1.49199 1.28666 1.06814 1.22353 0.95188 0.86929 1.00608 1.23182 1.04412 0.91746 0.83441 1.88107 1.42324 1.47042 1.52156 1.22823 0.92546 0.93516 0.93095 1.21507 0.80401 0.85410 0.87500 1.90667 1.40443 1.26901 1.87847 0.93520 0.93188 0.93233 0.94039 0.93102 0.92744 0.90518 0.89690 0.83323 0.91611 0.84514 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 9.78 71.98 0.70 -4.51 16 2 C -0.13 -6.41 5.10 30.60 0.16 -6.26 16 3 C 0.28 14.18 1.92 44.25 0.09 14.26 16 4 H 0.03 1.69 7.84 -2.39 -0.02 1.67 16 5 C -0.52 -29.73 7.50 25.60 0.19 -29.53 16 6 H 0.04 2.21 7.30 -2.91 -0.02 2.19 16 7 C 0.02 1.03 5.20 84.65 0.44 1.47 16 8 N -0.92 -53.30 11.98 21.44 0.26 -53.04 16 9 Si 0.95 46.13 29.54 68.60 2.03 48.15 16 10 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 N -0.59 -24.69 2.15 -804.83 -1.73 -26.43 16 14 C 0.07 2.15 6.55 86.46 0.57 2.72 16 15 C 0.05 1.09 6.89 71.99 0.50 1.59 16 16 O -0.38 -10.06 10.86 -148.98 -1.62 -11.67 16 17 C 0.06 1.76 6.98 71.12 0.50 2.26 16 18 C 0.46 19.47 6.83 87.68 0.60 20.07 16 19 O -0.58 -29.87 13.62 -3.00 -0.04 -29.91 16 20 H 0.05 1.77 7.69 -2.39 -0.02 1.75 16 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.04 2.28 5.89 -2.39 -0.01 2.27 16 24 H 0.05 2.86 6.65 -2.39 -0.02 2.84 16 25 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.08 2.47 8.10 -2.39 -0.02 2.45 16 28 H 0.15 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 30 H 0.14 3.56 8.14 -2.38 -0.02 3.54 16 31 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -69.77 254.94 3.74 -66.03 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.11 Total: 4.79 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 3.74 Total: 2.08 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -1.47 Total: -79.47 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.66 Total: -41.58 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -69.77 3.74 -66.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885408502.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.979 kcal (2) G-P(sol) polarization free energy of solvation -69.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds