Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50722 * 108.00512 * 2 1 4 4 S 1.84481 * 102.54128 * 78.96362 * 3 2 1 5 5 C 1.84797 * 97.02543 * 6.68293 * 4 3 2 6 6 C 1.52626 * 100.31518 * 24.52651 * 5 4 3 7 7 H 1.08997 * 110.64360 * 71.17833 * 6 5 4 8 8 C 1.52196 * 120.07117 * 202.79473 * 6 5 4 9 9 N 1.49278 * 102.91032 * 155.03570 * 8 6 5 10 10 C 1.36938 * 125.89454 * 155.00736 * 9 8 6 11 11 H 1.07993 * 120.00455 * 180.02562 * 10 9 8 12 12 C 1.38812 * 119.99629 * 0.02562 * 10 9 8 13 13 N 1.31617 * 120.00215 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99945 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46951 * 60.00038 * 14 12 10 16 16 H 1.48496 * 109.47145 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47314 * 300.00172 * 14 12 10 18 18 C 1.48955 * 108.21617 * 335.02503 * 9 8 6 19 19 H 1.08995 * 109.46858 * 304.78073 * 1 2 3 20 20 H 1.09006 * 109.46715 * 64.77968 * 1 2 3 21 21 H 1.08998 * 109.46975 * 184.77736 * 1 2 3 22 22 H 1.09008 * 110.79431 * 320.70370 * 3 2 1 23 23 H 1.09001 * 110.79394 * 197.22807 * 3 2 1 24 24 H 1.09001 * 111.24357 * 266.75861 * 5 4 3 25 25 H 1.09002 * 111.24371 * 142.29165 * 5 4 3 26 26 H 1.09007 * 110.72192 * 273.38578 * 8 6 5 27 27 H 1.09001 * 110.72920 * 36.67615 * 8 6 5 28 28 H 0.97006 * 120.00376 * 180.02562 * 13 12 10 29 29 H 1.09002 * 110.33244 * 236.33844 * 18 9 8 30 30 H 1.09004 * 110.32775 * 114.11311 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 1.9959 1.4334 0.0000 4 16 1.7919 1.9209 1.7675 5 6 1.3445 0.2482 2.4131 6 6 1.9924 -0.6367 1.3517 7 1 3.0785 -0.6111 1.4408 8 6 1.4920 -2.0575 1.1342 9 7 1.8787 -2.3343 -0.2808 10 6 2.1006 -3.5711 -0.8252 11 1 2.3779 -3.6615 -1.8650 12 6 1.9690 -4.7085 -0.0405 13 7 1.6315 -4.5982 1.2269 14 14 2.2709 -6.3957 -0.7833 15 1 3.6640 -6.4702 -1.2925 16 1 2.0677 -7.4373 0.2554 17 1 1.3219 -6.6206 -1.9031 18 6 1.9821 -1.0330 -0.9984 19 1 -0.3633 0.5862 0.8440 20 1 -0.3633 0.4379 -0.9298 21 1 -0.3633 -1.0241 0.0856 22 1 1.3655 2.0452 -0.6454 23 1 3.0412 1.5006 -0.3018 24 1 0.2635 0.1100 2.4364 25 1 1.7841 0.0734 3.3951 26 1 1.9902 -2.7500 1.8127 27 1 0.4100 -2.1082 1.2554 28 1 1.5400 -5.3931 1.7754 29 1 1.3283 -1.0285 -1.8705 30 1 3.0137 -0.8459 -1.2964 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885419966.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = 39.083612 kcal Electronic energy + Delta-G solvation = -12996.474893 eV Core-core repulsion = 10919.057875 eV Total energy + Delta-G solvation = -2077.417019 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52732 -33.83864 -30.93294 -30.58909 -27.11086 -26.37133 -25.52469 -22.66488 -19.86156 -18.19449 -16.85728 -15.88322 -15.47459 -14.48144 -14.25789 -14.21605 -13.73471 -12.64159 -12.16417 -11.89683 -11.78147 -11.58113 -11.31349 -11.15656 -10.98586 -10.68790 -10.41991 -10.33430 -9.91634 -9.74545 -9.73663 -9.21021 -8.70472 -7.48150 -6.91100 -5.70010 -3.11325 2.12559 2.57214 3.38487 3.42779 3.43971 4.41908 4.87365 4.97752 5.06168 5.41508 5.46832 5.57868 5.71580 5.77887 5.84774 5.92237 6.00510 6.16091 6.31384 6.37245 6.56473 6.60931 6.70078 6.86495 7.40432 7.52264 7.76544 8.23248 9.12831 9.74235 10.40047 11.34827 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.065173 B = 0.009011 C = 0.008468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.519917 B = 3106.436162 C = 3305.731273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.030 4.030 4 S -0.335 6.335 5 C -0.039 4.039 6 C -0.123 4.123 7 H 0.082 0.918 8 C 0.172 3.828 9 N -0.605 5.605 10 C -0.222 4.222 11 H 0.078 0.922 12 C -0.011 4.011 13 N -0.923 5.923 14 Si 0.915 3.085 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.286 1.286 18 C 0.161 3.839 19 H 0.056 0.944 20 H 0.048 0.952 21 H 0.076 0.924 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.024 0.976 28 H 0.253 0.747 29 H 0.034 0.966 30 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 8.949 -0.150 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.104 4.104 3 C -0.178 4.178 4 S -0.107 6.107 5 C -0.187 4.187 6 C -0.144 4.144 7 H 0.100 0.900 8 C 0.047 3.953 9 N -0.332 5.332 10 C -0.351 4.351 11 H 0.096 0.904 12 C -0.206 4.206 13 N -0.572 5.572 14 Si 0.746 3.254 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.212 1.212 18 C 0.034 3.966 19 H 0.075 0.925 20 H 0.067 0.933 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.763 9.824 0.477 9.865 hybrid contribution -0.009 -1.829 -0.979 2.075 sum -0.772 7.995 -0.502 8.048 Atomic orbital electron populations 1.22309 0.94084 1.03440 1.00990 1.21386 0.97546 0.92369 0.99068 1.23131 1.04278 0.97541 0.92894 1.87611 1.92222 1.20441 1.10459 1.23805 1.03637 0.90365 1.00893 1.23197 1.00729 0.99363 0.91103 0.89984 1.21559 0.97228 0.88993 0.87547 1.45436 1.81645 1.00034 1.06113 1.19050 1.39460 0.81788 0.94753 0.90431 1.24766 1.01961 0.97847 0.96060 1.69760 1.54354 1.27534 1.05542 0.86142 0.78006 0.83511 0.77764 1.21178 1.21552 1.21233 1.20607 0.97532 0.85435 0.92996 0.92529 0.93314 0.90556 0.88958 0.89389 0.88820 0.88446 0.87364 0.95847 0.93615 0.94789 0.95709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 7.18 37.16 0.27 -2.26 16 2 C -0.10 -1.77 1.07 -155.01 -0.17 -1.93 16 3 C -0.03 -0.45 6.63 36.02 0.24 -0.21 16 4 S -0.33 -5.27 22.70 -107.50 -2.44 -7.71 16 5 C -0.04 -0.62 6.54 36.97 0.24 -0.38 16 6 C -0.12 -2.30 2.70 -89.39 -0.24 -2.54 16 7 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 8 C 0.17 3.99 5.06 -2.91 -0.01 3.98 16 9 N -0.61 -15.04 3.40 -170.80 -0.58 -15.62 16 10 C -0.22 -6.07 10.31 -15.06 -0.16 -6.22 16 11 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 12 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 13 N -0.92 -26.28 10.12 55.49 0.56 -25.71 16 14 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.16 3.28 6.48 -3.88 -0.03 3.25 16 19 H 0.06 0.88 5.51 -51.93 -0.29 0.60 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.08 1.48 5.88 -51.93 -0.31 1.17 16 22 H 0.09 1.23 7.95 -51.92 -0.41 0.82 16 23 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.09 1.45 6.44 -51.93 -0.33 1.12 16 25 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.11 2.86 5.92 -51.92 -0.31 2.55 16 27 H 0.02 0.57 6.45 -51.93 -0.33 0.23 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.03 0.68 7.89 -51.93 -0.41 0.27 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 241.45 15.07 3.64 3.64 Total: -1.00 -28.15 241.45 -7.85 -35.99 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.05 Total: -0.62 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 0.05 Total: -6.72 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.02 Total: -41.33 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -2.44 Total: -7.71 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.15 -7.85 -35.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885419966.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.076 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds