Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50722 * 108.00512 * 2 1 4 4 S 1.84481 * 102.54128 * 78.96362 * 3 2 1 5 5 C 1.84797 * 97.02543 * 6.68293 * 4 3 2 6 6 C 1.52626 * 100.31518 * 24.52651 * 5 4 3 7 7 H 1.08997 * 110.64360 * 71.17833 * 6 5 4 8 8 C 1.52196 * 120.07117 * 202.79473 * 6 5 4 9 9 N 1.49278 * 102.91032 * 155.03570 * 8 6 5 10 10 C 1.36938 * 125.89454 * 155.00736 * 9 8 6 11 11 H 1.07993 * 120.00455 * 180.02562 * 10 9 8 12 12 C 1.38812 * 119.99629 * 0.02562 * 10 9 8 13 13 N 1.31617 * 120.00215 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99945 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46951 * 60.00038 * 14 12 10 16 16 H 1.48496 * 109.47145 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47314 * 300.00172 * 14 12 10 18 18 C 1.48955 * 108.21617 * 335.02503 * 9 8 6 19 19 H 1.08995 * 109.46858 * 304.78073 * 1 2 3 20 20 H 1.09006 * 109.46715 * 64.77968 * 1 2 3 21 21 H 1.08998 * 109.46975 * 184.77736 * 1 2 3 22 22 H 1.09008 * 110.79431 * 320.70370 * 3 2 1 23 23 H 1.09001 * 110.79394 * 197.22807 * 3 2 1 24 24 H 1.09001 * 111.24357 * 266.75861 * 5 4 3 25 25 H 1.09002 * 111.24371 * 142.29165 * 5 4 3 26 26 H 1.09007 * 110.72192 * 273.38578 * 8 6 5 27 27 H 1.09001 * 110.72920 * 36.67615 * 8 6 5 28 28 H 0.97006 * 120.00376 * 180.02562 * 13 12 10 29 29 H 1.09002 * 110.33244 * 236.33844 * 18 9 8 30 30 H 1.09004 * 110.32775 * 114.11311 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 1.9959 1.4334 0.0000 4 16 1.7919 1.9209 1.7675 5 6 1.3445 0.2482 2.4131 6 6 1.9924 -0.6367 1.3517 7 1 3.0785 -0.6111 1.4408 8 6 1.4920 -2.0575 1.1342 9 7 1.8787 -2.3343 -0.2808 10 6 2.1006 -3.5711 -0.8252 11 1 2.3779 -3.6615 -1.8650 12 6 1.9690 -4.7085 -0.0405 13 7 1.6315 -4.5982 1.2269 14 14 2.2709 -6.3957 -0.7833 15 1 3.6640 -6.4702 -1.2925 16 1 2.0677 -7.4373 0.2554 17 1 1.3219 -6.6206 -1.9031 18 6 1.9821 -1.0330 -0.9984 19 1 -0.3633 0.5862 0.8440 20 1 -0.3633 0.4379 -0.9298 21 1 -0.3633 -1.0241 0.0856 22 1 1.3655 2.0452 -0.6454 23 1 3.0412 1.5006 -0.3018 24 1 0.2635 0.1100 2.4364 25 1 1.7841 0.0734 3.3951 26 1 1.9902 -2.7500 1.8127 27 1 0.4100 -2.1082 1.2554 28 1 1.5400 -5.3931 1.7754 29 1 1.3283 -1.0285 -1.8705 30 1 3.0137 -0.8459 -1.2964 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885419966.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = 23.135885 kcal Electronic energy + Delta-G solvation = -12997.166439 eV Core-core repulsion = 10919.057875 eV Total energy + Delta-G solvation = -2078.108564 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.07945 -35.70437 -32.80639 -32.08113 -28.60778 -28.04827 -27.13101 -24.45064 -21.55244 -19.70800 -18.77155 -17.37751 -16.99141 -16.24019 -15.80459 -15.71966 -15.33698 -14.28890 -13.94242 -13.29696 -13.23979 -13.13653 -12.95473 -12.83462 -12.57790 -12.35955 -12.18683 -11.98117 -11.71232 -11.40182 -11.30455 -10.75056 -10.67801 -8.92023 -8.69206 -7.77443 -5.20959 0.86645 1.28877 1.47367 1.49900 1.56201 2.48402 3.32531 3.40913 3.44225 3.65030 4.13859 4.16842 4.25058 4.30372 4.50407 4.62407 4.65342 4.72788 4.78720 4.87166 5.03010 5.10979 5.22298 5.39327 5.45861 5.60565 5.78023 6.24696 7.06387 7.72238 8.39204 9.24921 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.065173 B = 0.009011 C = 0.008468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.519917 B = 3106.436162 C = 3305.731273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.025 4.025 4 S -0.324 6.324 5 C -0.036 4.036 6 C -0.116 4.116 7 H 0.070 0.930 8 C 0.181 3.819 9 N -0.628 5.628 10 C -0.238 4.238 11 H 0.081 0.919 12 C -0.066 4.066 13 N -0.948 5.948 14 Si 0.979 3.021 15 H -0.279 1.279 16 H -0.294 1.294 17 H -0.279 1.279 18 C 0.158 3.842 19 H 0.070 0.930 20 H 0.068 0.932 21 H 0.043 0.957 22 H 0.118 0.882 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.008 0.992 28 H 0.247 0.753 29 H 0.039 0.961 30 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 10.434 -0.847 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.173 4.173 4 S -0.096 6.096 5 C -0.184 4.184 6 C -0.137 4.137 7 H 0.089 0.911 8 C 0.055 3.945 9 N -0.355 5.355 10 C -0.367 4.367 11 H 0.099 0.901 12 C -0.258 4.258 13 N -0.598 5.598 14 Si 0.807 3.193 15 H -0.205 1.205 16 H -0.220 1.220 17 H -0.205 1.205 18 C 0.032 3.968 19 H 0.088 0.912 20 H 0.087 0.913 21 H 0.062 0.938 22 H 0.136 0.864 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.089 0.911 27 H 0.026 0.974 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.746 11.341 -0.236 11.368 hybrid contribution -0.004 -2.261 -0.787 2.394 sum -0.750 9.079 -1.023 9.167 Atomic orbital electron populations 1.22223 0.93418 1.01789 1.02661 1.21279 0.97976 0.93195 0.96718 1.23168 1.05499 0.95621 0.92987 1.87644 1.92279 1.19007 1.10682 1.23749 1.03862 0.90237 1.00567 1.22948 1.00007 0.97224 0.93522 0.91142 1.21224 0.95832 0.91037 0.86431 1.45735 1.81541 1.00942 1.07315 1.19417 1.38919 0.83230 0.95084 0.90125 1.25573 1.02450 1.01239 0.96580 1.70013 1.55417 1.27793 1.06554 0.85150 0.78065 0.79191 0.76892 1.20469 1.22006 1.20540 1.20732 0.97899 0.84510 0.93627 0.91169 0.91326 0.93790 0.86405 0.88386 0.88206 0.87366 0.91065 0.97437 0.94318 0.94265 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 7.18 71.98 0.52 -4.01 16 2 C -0.09 -2.95 1.07 -52.51 -0.06 -3.01 16 3 C -0.02 -0.65 6.63 71.24 0.47 -0.18 16 4 S -0.32 -9.17 22.70 -56.49 -1.28 -10.46 16 5 C -0.04 -1.09 6.54 71.86 0.47 -0.62 16 6 C -0.12 -4.27 2.70 -10.00 -0.03 -4.30 16 7 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 8 C 0.18 8.58 5.06 85.57 0.43 9.01 16 9 N -0.63 -31.60 3.40 -694.29 -2.36 -33.96 16 10 C -0.24 -13.13 10.31 84.03 0.87 -12.26 16 11 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 12 C -0.07 -3.68 5.49 84.86 0.47 -3.22 16 13 N -0.95 -55.57 10.12 21.65 0.22 -55.35 16 14 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 C 0.16 6.28 6.48 85.13 0.55 6.83 16 19 H 0.07 2.01 5.51 -2.39 -0.01 2.00 16 20 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 21 H 0.04 1.68 5.88 -2.39 -0.01 1.66 16 22 H 0.12 2.59 7.95 -2.38 -0.02 2.57 16 23 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.10 2.92 6.44 -2.39 -0.02 2.90 16 25 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.07 3.92 5.92 -2.38 -0.01 3.91 16 27 H 0.01 0.39 6.45 -2.39 -0.02 0.37 16 28 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 29 H 0.04 1.52 7.89 -2.39 -0.02 1.50 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -60.50 241.45 3.42 -57.09 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.12 Total: 7.16 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 3.69 Total: -11.75 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -2.14 Total: -89.31 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.28 Total: -10.46 kcal Total: -60.50 3.42 -57.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885419966.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.223 kcal (2) G-P(sol) polarization free energy of solvation -60.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds