Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99768 * 2 1 4 4 H 1.48494 * 109.47427 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.46972 * 30.00037 * 3 2 1 6 6 H 1.48493 * 109.47216 * 149.99927 * 3 2 1 7 7 C 1.37867 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99954 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00321 * 180.02562 * 7 2 1 10 10 O 1.42905 * 112.93480 * 309.66467 * 9 7 2 11 11 C 1.53935 * 113.73594 * 81.23219 * 9 7 2 12 12 N 1.48296 * 86.06285 * 138.13261 * 11 9 7 13 13 C 1.46902 * 111.00705 * 222.42219 * 12 11 9 14 14 H 1.08995 * 110.80580 * 52.97558 * 13 12 11 15 15 C 1.54816 * 110.90405 * 289.34922 * 13 12 11 16 16 C 1.54094 * 104.18744 * 220.92122 * 15 13 12 17 17 O 1.43738 * 107.29437 * 357.97108 * 16 15 13 18 18 C 1.44375 * 106.97784 * 26.51616 * 17 16 15 19 19 C 1.47961 * 90.75572 * 335.31010 * 12 11 9 20 20 H 0.96995 * 120.00118 * 359.97438 * 1 2 3 21 21 H 0.96698 * 113.99668 * 50.33725 * 10 9 7 22 22 H 1.09001 * 113.76001 * 252.50846 * 11 9 7 23 23 H 1.08997 * 113.75664 * 23.87077 * 11 9 7 24 24 H 1.08998 * 110.48863 * 339.60186 * 15 13 12 25 25 H 1.09000 * 110.48526 * 102.10988 * 15 13 12 26 26 H 1.09003 * 109.87720 * 117.39881 * 16 15 13 27 27 H 1.09002 * 109.87964 * 238.54634 * 16 15 13 28 28 H 1.08999 * 110.62088 * 201.43755 * 18 17 16 29 29 H 1.08996 * 110.62252 * 78.43858 * 18 17 16 30 30 H 1.08998 * 113.75850 * 270.36902 * 19 12 11 31 31 H 1.08999 * 113.76020 * 139.00393 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 8 4.0689 -0.3541 -1.0120 11 6 4.1307 -0.9788 1.3940 12 7 5.0984 -2.0366 1.0147 13 6 5.3303 -2.9630 2.1309 14 1 4.3869 -3.3542 2.5117 15 6 6.1396 -2.2775 3.2587 16 6 7.1360 -3.3589 3.7194 17 8 6.8648 -4.5442 2.9530 18 6 6.2766 -4.1148 1.7064 19 6 4.1312 -2.6023 0.0484 20 1 -0.4850 0.8400 0.0004 21 1 3.7028 0.5408 -1.0262 22 1 4.5819 0.0045 1.5269 23 1 3.4720 -1.2604 2.2155 24 1 6.6715 -1.4082 2.8723 25 1 5.4819 -1.9878 4.0783 26 1 8.1571 -3.0243 3.5359 27 1 6.9962 -3.5637 4.7808 28 1 5.7116 -4.9268 1.2487 29 1 7.0449 -3.7490 1.0253 30 1 3.4727 -3.3576 0.4772 31 1 4.5829 -2.9151 -0.8930 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193713392.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = -43.204866 kcal Electronic energy + Delta-G solvation = -14842.741434 eV Core-core repulsion = 12319.003248 eV Total energy + Delta-G solvation = -2523.738186 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93797 -38.32250 -34.82767 -32.46714 -31.47429 -29.22044 -26.93909 -25.53681 -23.76516 -22.21735 -20.25592 -19.17138 -17.37487 -16.48637 -16.18625 -15.99681 -15.10285 -14.68054 -13.87155 -13.55519 -13.38248 -13.18638 -12.77756 -12.54737 -12.12444 -11.49294 -11.29360 -11.26109 -10.83109 -10.67909 -10.51116 -10.37011 -10.01661 -9.58542 -9.32470 -8.91551 -8.63592 -8.10367 -6.35874 -4.40629 3.04517 3.11221 3.19159 3.97659 4.10381 4.47191 4.69849 4.82244 4.97296 5.07538 5.26443 5.40329 5.57626 5.67777 5.72791 5.83444 5.88062 5.95461 5.97720 6.19907 6.23278 6.40300 6.55688 6.82495 6.85868 6.92737 7.30930 7.68059 8.12093 8.65517 8.66498 9.23260 10.76668 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053714 B = 0.008593 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.153514 B = 3257.825853 C = 3337.357874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.078 3.922 3 Si 0.859 3.141 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.201 3.799 10 O -0.552 6.552 11 C -0.027 4.027 12 N -0.468 5.468 13 C 0.014 3.986 14 H 0.063 0.937 15 C -0.148 4.148 16 C 0.051 3.949 17 O -0.384 6.384 18 C 0.058 3.942 19 C 0.023 3.977 20 H 0.269 0.731 21 H 0.349 0.651 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.113 -2.709 5.256 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.127 4.127 3 Si 0.688 3.312 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.576 4.576 8 H 0.103 0.897 9 C 0.160 3.840 10 O -0.362 6.362 11 C -0.156 4.156 12 N -0.192 5.192 13 C -0.096 4.096 14 H 0.081 0.919 15 C -0.186 4.186 16 C -0.026 4.026 17 O -0.302 6.302 18 C -0.019 4.019 19 C -0.106 4.106 20 H 0.079 0.921 21 H 0.200 0.800 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.997 -3.193 5.012 12.500 hybrid contribution -0.878 1.406 0.513 1.735 sum 10.120 -1.786 5.525 11.667 Atomic orbital electron populations 1.69877 1.06143 1.27479 1.48355 1.25014 0.94890 0.99135 0.93648 0.87315 0.80704 0.84105 0.79107 1.19449 1.21245 1.17719 1.21397 0.88513 0.95369 1.52294 0.89675 1.20463 0.92076 0.87829 0.83598 1.86456 1.67420 1.25323 1.56974 1.25067 0.93334 0.95662 1.01511 1.68690 1.34338 1.07575 1.08644 1.23787 0.98378 0.94251 0.93215 0.91941 1.22907 0.98263 0.99279 0.98161 1.23086 0.98072 0.85294 0.96124 1.88821 1.82504 1.29081 1.29830 1.23496 0.95426 0.96312 0.86628 1.24013 0.92722 0.97237 0.96583 0.92087 0.80018 0.90704 0.90875 0.89806 0.90807 0.92546 0.90224 0.89212 0.91240 0.90727 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.96 55.43 0.77 -24.85 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.86 19.75 24.31 -169.99 -4.13 15.61 16 4 H -0.27 -5.99 7.05 56.52 0.40 -5.59 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.25 -5.48 5.15 56.52 0.29 -5.19 16 7 C -0.54 -14.56 9.19 -34.44 -0.32 -14.88 16 8 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 9 C 0.20 4.75 1.05 -90.84 -0.10 4.65 16 10 O -0.55 -13.45 13.35 -35.23 -0.47 -13.92 16 11 C -0.03 -0.56 6.06 -2.57 -0.02 -0.58 16 12 N -0.47 -8.95 5.99 -227.54 -1.36 -10.32 16 13 C 0.01 0.22 2.35 -65.70 -0.15 0.07 16 14 H 0.06 1.05 7.80 -51.93 -0.41 0.65 16 15 C -0.15 -2.07 6.30 -25.20 -0.16 -2.23 16 16 C 0.05 0.65 7.70 37.73 0.29 0.94 16 17 O -0.38 -5.81 11.52 -35.23 -0.41 -6.22 16 18 C 0.06 0.86 7.16 38.21 0.27 1.14 16 19 C 0.02 0.47 7.14 -2.76 -0.02 0.45 16 20 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 21 H 0.35 8.15 3.57 45.56 0.16 8.31 16 22 H 0.07 1.57 6.82 -51.93 -0.35 1.22 16 23 H 0.07 1.52 7.82 -51.93 -0.41 1.12 16 24 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16 31 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 247.86 15.07 3.74 3.74 Total: -1.00 -29.15 247.86 -6.19 -35.34 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.03 Total: 9.03 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.29 Total: -8.41 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.59 Total: -35.16 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.88 Total: -20.14 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.13 Total: 15.61 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.15 -6.19 -35.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193713392.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.869 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds