Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99768 * 2 1 4 4 H 1.48494 * 109.47427 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.46972 * 30.00037 * 3 2 1 6 6 H 1.48493 * 109.47216 * 149.99927 * 3 2 1 7 7 C 1.37867 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99954 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00321 * 180.02562 * 7 2 1 10 10 O 1.42905 * 112.93480 * 309.66467 * 9 7 2 11 11 C 1.53935 * 113.73594 * 81.23219 * 9 7 2 12 12 N 1.48296 * 86.06285 * 138.13261 * 11 9 7 13 13 C 1.46902 * 111.00705 * 222.42219 * 12 11 9 14 14 H 1.08995 * 110.80580 * 52.97558 * 13 12 11 15 15 C 1.54816 * 110.90405 * 289.34922 * 13 12 11 16 16 C 1.54094 * 104.18744 * 220.92122 * 15 13 12 17 17 O 1.43738 * 107.29437 * 357.97108 * 16 15 13 18 18 C 1.44375 * 106.97784 * 26.51616 * 17 16 15 19 19 C 1.47961 * 90.75572 * 335.31010 * 12 11 9 20 20 H 0.96995 * 120.00118 * 359.97438 * 1 2 3 21 21 H 0.96698 * 113.99668 * 50.33725 * 10 9 7 22 22 H 1.09001 * 113.76001 * 252.50846 * 11 9 7 23 23 H 1.08997 * 113.75664 * 23.87077 * 11 9 7 24 24 H 1.08998 * 110.48863 * 339.60186 * 15 13 12 25 25 H 1.09000 * 110.48526 * 102.10988 * 15 13 12 26 26 H 1.09003 * 109.87720 * 117.39881 * 16 15 13 27 27 H 1.09002 * 109.87964 * 238.54634 * 16 15 13 28 28 H 1.08999 * 110.62088 * 201.43755 * 18 17 16 29 29 H 1.08996 * 110.62252 * 78.43858 * 18 17 16 30 30 H 1.08998 * 113.75850 * 270.36902 * 19 12 11 31 31 H 1.08999 * 113.76020 * 139.00393 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 8 4.0689 -0.3541 -1.0120 11 6 4.1307 -0.9788 1.3940 12 7 5.0984 -2.0366 1.0147 13 6 5.3303 -2.9630 2.1309 14 1 4.3869 -3.3542 2.5117 15 6 6.1396 -2.2775 3.2587 16 6 7.1360 -3.3589 3.7194 17 8 6.8648 -4.5442 2.9530 18 6 6.2766 -4.1148 1.7064 19 6 4.1312 -2.6023 0.0484 20 1 -0.4850 0.8400 0.0004 21 1 3.7028 0.5408 -1.0262 22 1 4.5819 0.0045 1.5269 23 1 3.4720 -1.2604 2.2155 24 1 6.6715 -1.4082 2.8723 25 1 5.4819 -1.9878 4.0783 26 1 8.1571 -3.0243 3.5359 27 1 6.9962 -3.5637 4.7808 28 1 5.7116 -4.9268 1.2487 29 1 7.0449 -3.7490 1.0253 30 1 3.4727 -3.3576 0.4772 31 1 4.5829 -2.9151 -0.8930 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193713392.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = -68.209060 kcal Electronic energy + Delta-G solvation = -14843.825697 eV Core-core repulsion = 12319.003248 eV Total energy + Delta-G solvation = -2524.822449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.41719 -39.68460 -36.57481 -34.55287 -32.78723 -30.46878 -28.72969 -27.16936 -25.45082 -23.35013 -21.63231 -20.91385 -19.33855 -18.05107 -17.73641 -17.37018 -16.42166 -16.06987 -15.54755 -15.14705 -14.93786 -14.79295 -14.39608 -13.97774 -13.83652 -13.08760 -12.82429 -12.59072 -12.46645 -12.25268 -12.01201 -11.88355 -11.65115 -11.14913 -10.91275 -10.68056 -10.46664 -9.74243 -8.45514 -6.56506 1.22393 1.27910 1.37336 2.16338 2.70913 2.81095 3.09531 3.47239 3.53615 3.84370 3.96283 4.06235 4.11274 4.26234 4.36130 4.48205 4.70747 4.76011 4.78726 4.83762 4.87566 4.91633 5.05756 5.13358 5.30786 5.31610 5.79249 6.02035 6.17057 6.49022 6.76843 7.11897 8.70400 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053714 B = 0.008593 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.153514 B = 3257.825853 C = 3337.357874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.023 3.977 3 Si 0.922 3.078 4 H -0.255 1.255 5 H -0.284 1.284 6 H -0.230 1.230 7 C -0.549 4.549 8 H 0.047 0.953 9 C 0.184 3.816 10 O -0.557 6.557 11 C -0.016 4.016 12 N -0.461 5.461 13 C 0.006 3.994 14 H 0.055 0.945 15 C -0.144 4.144 16 C 0.050 3.950 17 O -0.397 6.397 18 C 0.064 3.936 19 C 0.028 3.972 20 H 0.272 0.728 21 H 0.352 0.648 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.245 -2.092 6.035 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.178 4.178 3 Si 0.746 3.254 4 H -0.180 1.180 5 H -0.210 1.210 6 H -0.154 1.154 7 C -0.587 4.587 8 H 0.065 0.935 9 C 0.143 3.857 10 O -0.367 6.367 11 C -0.145 4.145 12 N -0.185 5.185 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.182 4.182 16 C -0.026 4.026 17 O -0.316 6.316 18 C -0.013 4.013 19 C -0.101 4.101 20 H 0.081 0.919 21 H 0.203 0.797 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.151 -2.593 5.794 14.603 hybrid contribution -1.584 1.117 0.271 1.958 sum 11.567 -1.475 6.065 13.144 Atomic orbital electron populations 1.70022 1.08082 1.28708 1.49982 1.25886 0.95660 1.03174 0.93048 0.86285 0.80116 0.78932 0.80055 1.18016 1.21014 1.15412 1.21595 0.90742 0.94130 1.52240 0.93515 1.20625 0.90102 0.89923 0.85049 1.86448 1.67177 1.25655 1.57464 1.24853 0.93456 0.96741 0.99443 1.68637 1.32876 1.07607 1.09355 1.23868 0.98825 0.94575 0.93074 0.92715 1.22911 0.98354 0.99475 0.97489 1.23256 0.98392 0.84041 0.96928 1.88814 1.82525 1.30289 1.29962 1.23439 0.95129 0.95945 0.86798 1.23963 0.92908 0.95639 0.97546 0.91865 0.79684 0.90045 0.91130 0.89938 0.89884 0.91050 0.88160 0.88538 0.91093 0.90533 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.96 21.44 0.30 -54.96 16 2 C 0.02 1.24 5.47 84.65 0.46 1.71 16 3 Si 0.92 40.07 24.31 68.60 1.67 41.73 16 4 H -0.25 -10.49 7.05 99.48 0.70 -9.79 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.23 -9.12 5.15 99.48 0.51 -8.61 16 7 C -0.55 -30.25 9.19 25.60 0.24 -30.02 16 8 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 9 C 0.18 8.51 1.05 -10.89 -0.01 8.50 16 10 O -0.56 -26.14 13.35 -148.98 -1.99 -28.13 16 11 C -0.02 -0.63 6.06 86.34 0.52 -0.11 16 12 N -0.46 -16.69 5.99 -877.01 -5.25 -21.95 16 13 C 0.01 0.19 2.35 46.22 0.11 0.30 16 14 H 0.05 1.77 7.80 -2.39 -0.02 1.75 16 15 C -0.14 -3.62 6.30 31.58 0.20 -3.43 16 16 C 0.05 1.11 7.70 72.35 0.56 1.67 16 17 O -0.40 -10.98 11.52 -148.98 -1.72 -12.69 16 18 C 0.06 1.75 7.16 72.67 0.52 2.27 16 19 C 0.03 1.11 7.14 86.41 0.62 1.73 16 20 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 21 H 0.35 15.60 3.57 -74.06 -0.26 15.33 16 22 H 0.08 3.17 6.82 -2.39 -0.02 3.16 16 23 H 0.07 2.86 7.82 -2.39 -0.02 2.84 16 24 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 2.98 7.71 -2.39 -0.02 2.96 16 31 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -62.08 247.86 -3.13 -65.21 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.65 Total: 28.16 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 3.21 Total: -17.38 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -4.95 Total: -76.91 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -3.70 Total: -40.82 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.67 Total: 41.73 kcal Total: -62.08 -3.13 -65.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193713392.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.999 kcal (2) G-P(sol) polarization free energy of solvation -62.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds