Wall clock time and date at job start Mon Mar 30 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42902 * 112.93649 * 48.71324 * 9 7 2 11 11 C 1.53938 * 113.73794 * 277.00690 * 9 7 2 12 12 N 1.47963 * 86.17951 * 221.92208 * 11 9 7 13 13 C 1.46898 * 110.99631 * 137.58649 * 12 11 9 14 14 H 1.09006 * 110.45686 * 314.93259 * 13 12 11 15 15 C 1.54501 * 110.51630 * 77.54060 * 13 12 11 16 16 C 1.54480 * 104.06460 * 118.64248 * 15 13 12 17 17 O 1.44429 * 104.80459 * 23.98001 * 16 15 13 18 18 C 1.44646 * 105.36374 * 319.56838 * 17 16 15 19 19 C 1.47958 * 90.76665 * 24.68790 * 12 11 9 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 0.96698 * 114.00248 * 309.66822 * 10 9 7 22 22 H 1.08994 * 113.75491 * 336.24326 * 11 9 7 23 23 H 1.08995 * 113.75737 * 107.60260 * 11 9 7 24 24 H 1.08998 * 110.51426 * 237.28530 * 15 13 12 25 25 H 1.09003 * 110.51246 * 0.02562 * 15 13 12 26 26 H 1.09000 * 110.37759 * 142.81434 * 16 15 13 27 27 H 1.09007 * 110.37090 * 265.15125 * 16 15 13 28 28 H 1.08999 * 110.34020 * 281.58658 * 18 17 16 29 29 H 1.09008 * 110.50709 * 159.18703 * 18 17 16 30 30 H 1.08995 * 113.76417 * 220.99374 * 19 12 11 31 31 H 1.08996 * 113.85790 * 89.63722 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2164 -2.5492 -0.9790 11 6 0.7985 -2.9469 1.4069 12 7 1.2179 -4.3062 0.9997 13 6 1.9375 -4.9828 2.0870 14 1 2.6655 -4.3091 2.5392 15 6 0.9457 -5.5018 3.1520 16 6 1.1563 -7.0322 3.1469 17 8 2.4946 -7.2189 2.6369 18 6 2.6331 -6.2590 1.5637 19 6 2.1618 -3.7402 0.0108 20 1 -0.4850 0.8400 0.0004 21 1 -0.3756 -1.7848 -0.9666 22 1 1.3957 -2.5270 2.2162 23 1 -0.2742 -2.8499 1.5737 24 1 1.1847 -5.0867 4.1310 25 1 -0.0787 -5.2567 2.8715 26 1 1.0769 -7.4296 4.1588 27 1 0.4300 -7.5130 2.4915 28 1 2.1347 -6.6213 0.6647 29 1 3.6859 -6.0616 1.3615 30 1 2.1783 -4.2769 -0.9377 31 1 3.1583 -3.5519 0.4101 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193713393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:00 Heat of formation + Delta-G solvation = -80.408486 kcal Electronic energy + Delta-G solvation = -14779.965305 eV Core-core repulsion = 12254.613849 eV Total energy + Delta-G solvation = -2525.351456 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.27377 -39.47326 -36.15004 -34.12419 -32.65871 -30.31691 -28.50300 -26.92434 -25.44088 -23.52212 -21.53407 -20.52273 -19.20546 -17.59646 -17.26966 -17.12126 -16.45747 -16.08221 -15.60416 -15.10568 -14.76906 -14.47219 -13.84984 -13.72424 -13.35933 -13.01527 -12.89673 -12.44308 -12.37850 -12.27912 -12.11553 -11.92816 -11.62371 -11.16270 -10.80025 -10.64132 -10.13892 -9.62766 -8.26245 -6.44125 1.39666 1.43272 1.53991 2.35895 2.84487 2.96216 3.20293 3.54113 3.81887 3.98135 4.05815 4.20042 4.28612 4.36242 4.47611 4.54785 4.72143 4.80961 4.82821 4.88152 4.96826 5.02097 5.11494 5.37823 5.43401 5.72338 5.74389 5.97412 6.30605 6.61328 7.29127 7.52410 8.78705 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056336 B = 0.007754 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.900712 B = 3610.152284 C = 3669.889855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.027 3.973 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.561 4.561 8 H 0.064 0.936 9 C 0.217 3.783 10 O -0.584 6.584 11 C 0.001 3.999 12 N -0.469 5.469 13 C 0.008 3.992 14 H 0.053 0.947 15 C -0.143 4.143 16 C 0.050 3.950 17 O -0.393 6.393 18 C 0.060 3.940 19 C 0.017 3.983 20 H 0.274 0.726 21 H 0.383 0.617 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -7.336 5.444 9.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.173 4.173 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.599 4.599 8 H 0.082 0.918 9 C 0.176 3.824 10 O -0.395 6.395 11 C -0.129 4.129 12 N -0.193 5.193 13 C -0.101 4.101 14 H 0.071 0.929 15 C -0.181 4.181 16 C -0.026 4.026 17 O -0.311 6.311 18 C -0.017 4.017 19 C -0.112 4.112 20 H 0.084 0.916 21 H 0.237 0.763 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.132 0.868 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.530 -8.453 5.191 10.237 hybrid contribution 0.355 2.237 0.335 2.290 sum 2.885 -6.215 5.526 8.803 Atomic orbital electron populations 1.69428 1.07165 1.28604 1.50735 1.25800 0.95806 1.02713 0.92943 0.85377 0.78897 0.78736 0.77818 1.19236 1.20380 1.20262 1.21953 0.93856 0.91899 1.52176 0.91782 1.20139 0.85573 0.91947 0.84775 1.86022 1.45652 1.49785 1.58082 1.24431 0.99583 0.88430 1.00434 1.68589 1.26322 1.15286 1.09095 1.23677 0.95880 0.97062 0.93526 0.92910 1.22899 1.00041 0.96665 0.98489 1.23509 0.83843 0.94417 1.00827 1.89078 1.32722 1.58505 1.50838 1.23401 1.01271 0.86579 0.90455 1.24051 0.95292 0.95052 0.96795 0.91619 0.76344 0.92352 0.92446 0.89825 0.90564 0.86782 0.91794 0.91764 0.88173 0.90411 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.05 11.09 21.45 0.24 -48.81 16 2 C 0.03 1.42 5.40 84.65 0.46 1.87 16 3 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.56 -29.70 8.62 25.60 0.22 -29.48 16 8 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 9 C 0.22 10.90 1.44 -10.89 -0.02 10.88 16 10 O -0.58 -31.86 13.48 -148.98 -2.01 -33.87 16 11 C 0.00 0.03 7.11 86.41 0.61 0.64 16 12 N -0.47 -18.88 5.86 -879.63 -5.16 -24.03 16 13 C 0.01 0.27 2.39 45.93 0.11 0.38 16 14 H 0.05 1.79 7.77 -2.38 -0.02 1.77 16 15 C -0.14 -4.03 6.62 31.61 0.21 -3.82 16 16 C 0.05 1.24 7.64 72.49 0.55 1.79 16 17 O -0.39 -11.52 11.65 -148.98 -1.74 -13.26 16 18 C 0.06 1.78 6.81 72.48 0.49 2.27 16 19 C 0.02 0.71 6.86 86.41 0.59 1.30 16 20 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 21 H 0.38 21.37 6.47 -74.06 -0.48 20.89 16 22 H 0.06 2.63 7.68 -2.39 -0.02 2.61 16 23 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.08 2.31 7.94 -2.39 -0.02 2.29 16 26 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 29 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.08 3.05 7.83 -2.39 -0.02 3.03 16 Total: -1.00 -57.19 256.56 -2.77 -59.96 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.64 Total: 30.95 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 3.24 Total: -14.16 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -4.92 Total: -72.85 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -3.74 Total: -47.12 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -57.19 -2.77 -59.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193713393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.453 kcal (2) G-P(sol) polarization free energy of solvation -57.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds