Wall clock time and date at job start Mon Mar 30 2020 02:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48500 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47052 * 300.00036 * 3 2 1 6 6 H 1.48498 * 109.46916 * 60.00159 * 3 2 1 7 7 C 1.37872 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 O 1.42900 * 112.84940 * 53.80337 * 14 13 11 16 16 C 1.53777 * 113.61260 * 282.49840 * 14 13 11 17 17 C 1.53787 * 87.08094 * 220.01703 * 16 14 13 18 18 C 1.53782 * 113.61417 * 184.99972 * 14 13 11 19 19 H 0.96998 * 120.00722 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.46956 * 59.99427 * 9 7 2 21 21 H 1.09001 * 109.46317 * 299.99874 * 9 7 2 22 22 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 23 23 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 24 24 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 25 25 H 0.96705 * 114.00067 * 309.66509 * 15 14 13 26 26 H 1.09002 * 113.61291 * 334.56473 * 16 14 13 27 27 H 1.09004 * 113.61701 * 105.47060 * 16 14 13 28 28 H 1.09001 * 113.61182 * 270.88631 * 17 16 14 29 29 H 1.09000 * 113.69180 * 139.99144 * 17 16 14 30 30 H 1.08998 * 113.61104 * 254.52418 * 18 14 13 31 31 H 1.08997 * 113.61421 * 25.43294 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 -0.0052 14 6 1.9683 -7.3538 -0.0102 15 8 1.0162 -7.4408 -1.0722 16 6 1.3979 -7.7409 1.3644 17 6 1.8112 -9.1865 1.0411 18 6 2.8762 -8.5896 0.1060 19 1 -0.4851 0.8400 0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8904 22 1 3.1569 -3.4354 0.0009 23 1 3.3589 -5.9670 -0.8957 24 1 3.3610 -5.9750 0.8843 25 1 0.4269 -6.6767 -1.1357 26 1 1.9446 -7.3074 2.2018 27 1 0.3196 -7.6026 1.4444 28 1 1.0409 -9.7545 0.5194 29 1 2.2293 -9.7233 1.8926 30 1 2.9912 -9.1363 -0.8299 31 1 3.8269 -8.3880 0.5994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297147402.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:29 Heat of formation + Delta-G solvation = -81.393145 kcal Electronic energy + Delta-G solvation = -14198.702247 eV Core-core repulsion = 11673.308094 eV Total energy + Delta-G solvation = -2525.394154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01893 -38.08493 -34.48402 -33.98960 -32.41852 -30.22740 -27.07557 -25.64102 -23.63075 -22.16172 -19.81825 -19.46304 -17.17292 -16.31382 -15.79520 -15.42881 -15.06960 -14.80081 -14.50451 -14.11807 -13.18423 -12.80699 -12.65193 -12.21041 -11.98360 -11.73198 -11.31639 -11.09911 -10.99821 -10.93816 -10.76637 -10.36641 -10.25862 -9.46616 -9.41902 -9.07174 -8.79377 -7.97740 -6.20944 -4.28248 3.20789 3.23346 3.28067 3.31004 3.97181 4.27414 4.34463 4.66778 4.82868 4.88548 4.96606 5.15447 5.42577 5.58394 5.63462 5.70048 5.79217 5.80770 5.94189 6.21393 6.36302 6.44739 7.23572 7.31906 7.45405 7.60486 7.91426 8.07572 8.53276 8.71592 9.00676 9.38622 10.89291 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.078119 B = 0.005733 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.339808 B = 4882.549064 C = 5015.883089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.247 3.753 10 N -0.708 5.708 11 C 0.501 3.499 12 O -0.561 6.561 13 C -0.165 4.165 14 C 0.132 3.868 15 O -0.553 6.553 16 C -0.161 4.161 17 C -0.135 4.135 18 C -0.129 4.129 19 H 0.266 0.734 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.392 0.608 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.393 0.607 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 -12.638 1.450 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.126 3.874 10 N -0.355 5.355 11 C 0.287 3.713 12 O -0.443 6.443 13 C -0.206 4.206 14 C 0.090 3.910 15 O -0.367 6.367 16 C -0.199 4.199 17 C -0.173 4.173 18 C -0.166 4.166 19 H 0.076 0.924 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.225 0.775 23 H 0.113 0.887 24 H 0.116 0.884 25 H 0.249 0.751 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.393 -13.164 1.344 14.695 hybrid contribution 0.628 1.706 0.135 1.823 sum 7.021 -11.457 1.479 13.519 Atomic orbital electron populations 1.69978 1.06130 1.27279 1.48876 1.24954 0.94915 0.99505 0.94616 0.86353 0.79820 0.82902 0.77798 1.19625 1.20750 1.20757 1.21260 0.93305 0.90445 1.53281 0.91839 1.19148 0.88343 0.82038 0.97832 1.46514 1.11273 1.06262 1.71487 1.20500 0.89379 0.84494 0.76971 1.90493 1.17104 1.84566 1.52129 1.22351 0.99304 0.94306 1.04629 1.21709 0.89656 0.91734 0.87927 1.86254 1.49379 1.49740 1.51297 1.23558 1.02508 0.96166 0.97638 1.22744 0.98804 0.96601 0.99115 1.23060 0.97216 0.95954 1.00417 0.92443 0.95406 0.95432 0.77537 0.88659 0.88400 0.75066 0.89939 0.90579 0.90010 0.91697 0.90746 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.44 5.43 -5.19 -0.03 6.41 16 10 N -0.71 -14.48 5.55 -61.47 -0.34 -14.82 16 11 C 0.50 9.54 7.59 -10.98 -0.08 9.46 16 12 O -0.56 -12.50 13.59 -14.26 -0.19 -12.69 16 13 C -0.17 -2.31 5.34 -27.88 -0.15 -2.46 16 14 C 0.13 1.89 1.10 -89.81 -0.10 1.79 16 15 O -0.55 -9.38 13.39 -55.05 -0.74 -10.12 16 16 C -0.16 -2.19 7.17 -25.92 -0.19 -2.38 16 17 C -0.14 -1.55 8.02 -25.91 -0.21 -1.75 16 18 C -0.13 -1.46 7.47 -25.92 -0.19 -1.66 16 19 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 23 H 0.10 1.19 8.14 -51.92 -0.42 0.76 16 24 H 0.10 1.12 8.05 -51.93 -0.42 0.71 16 25 H 0.39 7.11 6.19 45.56 0.28 7.39 16 26 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 265.13 15.07 4.00 4.00 Total: -1.00 -30.70 265.13 -6.73 -37.43 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.81 Total: 9.59 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.36 Total: -3.86 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.40 Total: -39.98 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.93 Total: -22.81 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.70 -6.73 -37.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297147402.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.967 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds