Wall clock time and date at job start Mon Mar 30 2020 02:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46683 * 300.00504 * 3 2 1 6 6 H 1.48507 * 109.46795 * 59.99994 * 3 2 1 7 7 C 1.37876 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00152 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47082 * 300.00244 * 9 7 2 11 11 O 1.42896 * 109.46819 * 60.00045 * 9 7 2 12 12 C 1.53002 * 109.47010 * 180.02562 * 9 7 2 13 13 N 1.46903 * 109.47054 * 180.02562 * 12 9 7 14 14 C 1.48229 * 110.99899 * 283.64198 * 13 12 9 15 15 C 1.51119 * 105.35649 * 215.09768 * 14 13 12 16 16 C 1.30968 * 109.45830 * 16.97644 * 15 14 13 17 17 C 1.48222 * 111.00084 * 169.99754 * 13 12 9 18 18 H 1.09002 * 110.26579 * 25.92904 * 17 13 12 19 19 C 1.53003 * 110.26986 * 263.96519 * 17 13 12 20 20 O 1.42902 * 109.46648 * 296.28103 * 19 17 13 21 21 H 0.96992 * 120.00568 * 359.97438 * 1 2 3 22 22 H 0.96704 * 114.00139 * 60.00049 * 11 9 7 23 23 H 1.08995 * 109.47009 * 60.00027 * 12 9 7 24 24 H 1.08997 * 109.47254 * 299.99964 * 12 9 7 25 25 H 1.09001 * 110.26556 * 334.06770 * 14 13 12 26 26 H 1.08994 * 110.26961 * 96.12472 * 14 13 12 27 27 H 1.07997 * 125.26941 * 196.96906 * 15 14 13 28 28 H 1.07997 * 125.26785 * 179.97438 * 16 15 14 29 29 H 1.08993 * 109.47376 * 56.27791 * 19 17 13 30 30 H 1.08994 * 109.47203 * 176.28366 * 19 17 13 31 31 H 0.96708 * 113.99928 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3964 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2454 -3.6620 -0.0005 13 7 1.5110 -4.9343 -0.0012 14 6 0.9623 -5.2316 1.3434 15 6 1.0502 -6.7332 1.4885 16 6 1.8776 -7.2104 0.5924 17 6 2.4257 -6.0756 -0.2415 18 1 3.4361 -5.8240 0.0807 19 6 2.4220 -6.4547 -1.7238 20 8 1.1190 -6.9081 -2.0962 21 1 -0.4850 0.8399 0.0004 22 1 0.9210 -2.5290 -1.9984 23 1 2.8720 -3.6042 0.8894 24 1 2.8721 -3.6043 -0.8905 25 1 1.5606 -4.7423 2.1120 26 1 -0.0759 -4.9061 1.4079 27 1 0.5139 -7.3217 2.2181 28 1 2.1295 -8.2533 0.4690 29 1 2.6884 -5.5837 -2.3224 30 1 3.1468 -7.2501 -1.8972 31 1 1.0428 -7.1657 -3.0252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341855465.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:33 Heat of formation + Delta-G solvation = -61.912529 kcal Electronic energy + Delta-G solvation = -14592.687952 eV Core-core repulsion = 12068.138541 eV Total energy + Delta-G solvation = -2524.549411 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34353 -36.10984 -35.39052 -32.08127 -31.68296 -29.67066 -27.64690 -24.92691 -23.92222 -21.10347 -19.85412 -18.95998 -17.28090 -16.80759 -15.54883 -14.88181 -14.52301 -14.45134 -14.04711 -13.36108 -13.13507 -12.81844 -12.57051 -12.20557 -11.72145 -11.45236 -11.08460 -10.91571 -10.73438 -10.58030 -10.39998 -10.03073 -9.68095 -9.16286 -8.85504 -8.54439 -8.02441 -7.63445 -5.96989 -4.15856 2.47730 3.27906 3.35943 3.38953 4.34370 4.52268 4.53866 5.05530 5.08300 5.30313 5.45263 5.56322 5.74506 5.79737 5.92717 5.98723 6.01997 6.25065 6.34221 6.58003 6.65049 6.82629 7.02900 7.38489 7.62640 7.79877 7.90986 7.97760 8.23732 8.88518 9.50858 9.68136 11.07079 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048643 B = 0.007687 C = 0.007422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.483742 B = 3641.514932 C = 3771.825685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.241 3.759 10 H 0.053 0.947 11 O -0.551 6.551 12 C 0.017 3.983 13 N -0.473 5.473 14 C 0.056 3.944 15 C -0.165 4.165 16 C -0.156 4.156 17 C 0.075 3.925 18 H 0.067 0.933 19 C 0.099 3.901 20 O -0.551 6.551 21 H 0.260 0.740 22 H 0.341 0.659 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.308 -12.179 -0.934 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.183 3.817 10 H 0.070 0.930 11 O -0.352 6.352 12 C -0.111 4.111 13 N -0.197 5.197 14 C -0.071 4.071 15 C -0.183 4.183 16 C -0.175 4.175 17 C -0.033 4.033 18 H 0.084 0.916 19 C 0.021 3.979 20 O -0.354 6.354 21 H 0.069 0.931 22 H 0.183 0.817 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.120 -11.901 -0.253 12.596 hybrid contribution 1.845 0.853 -0.282 2.052 sum 5.965 -11.048 -0.535 12.567 Atomic orbital electron populations 1.70096 1.05894 1.26247 1.47024 1.25030 0.94679 0.99052 0.93914 0.86632 0.80156 0.83961 0.77695 1.19792 1.20853 1.20902 1.21703 0.93116 0.91668 1.54843 0.92751 1.19230 0.87693 0.88188 0.86599 0.92953 1.86584 1.37534 1.96275 1.14831 1.23417 0.97472 0.90708 0.99533 1.65688 1.28411 1.00614 1.24996 1.22057 1.01956 0.92422 0.90711 1.23577 0.98714 0.96603 0.99431 1.23246 0.99288 0.98166 0.96761 1.21732 0.95987 0.91461 0.94147 0.91571 1.21947 0.84369 0.96732 0.94873 1.86656 1.30959 1.87204 1.30614 0.93053 0.81668 0.95150 0.91969 0.92898 0.89601 0.85358 0.85619 0.93571 0.94408 0.78788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.82 12.84 55.43 0.71 -25.11 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.57 -16.03 8.76 -34.44 -0.30 -16.33 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.24 6.31 2.90 -27.88 -0.08 6.23 16 10 H 0.05 1.51 7.75 -51.93 -0.40 1.11 16 11 O -0.55 -15.01 12.60 -35.23 -0.44 -15.46 16 12 C 0.02 0.36 4.26 -3.82 -0.02 0.34 16 13 N -0.47 -9.34 4.99 -226.74 -1.13 -10.47 16 14 C 0.06 1.03 6.08 -4.04 -0.02 1.00 16 15 C -0.16 -2.51 10.95 -35.81 -0.39 -2.90 16 16 C -0.16 -2.29 9.74 -35.81 -0.35 -2.64 16 17 C 0.08 1.22 2.81 -67.93 -0.19 1.03 16 18 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 19 C 0.10 1.41 6.98 37.16 0.26 1.67 16 20 O -0.55 -8.40 13.05 -35.23 -0.46 -8.86 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.34 8.34 9.04 45.56 0.41 8.75 16 23 H 0.03 0.64 7.64 -51.93 -0.40 0.24 16 24 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 25 H 0.05 0.96 7.49 -51.93 -0.39 0.57 16 26 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 27 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.37 3.75 9.12 45.56 0.42 4.16 16 LS Contribution 265.71 15.07 4.00 4.00 Total: -1.00 -33.12 265.71 -6.37 -39.50 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -2.84 Total: 9.52 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.19 Total: -9.44 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.42 Total: -35.58 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.90 Total: -24.32 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.12 -6.37 -39.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341855465.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.416 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds