Wall clock time and date at job start Mon Mar 30 2020 02:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46683 * 300.00504 * 3 2 1 6 6 H 1.48507 * 109.46795 * 59.99994 * 3 2 1 7 7 C 1.37876 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00152 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47082 * 300.00244 * 9 7 2 11 11 O 1.42896 * 109.46819 * 60.00045 * 9 7 2 12 12 C 1.53002 * 109.47010 * 180.02562 * 9 7 2 13 13 N 1.46903 * 109.47054 * 180.02562 * 12 9 7 14 14 C 1.48229 * 110.99899 * 283.64198 * 13 12 9 15 15 C 1.51119 * 105.35649 * 215.09768 * 14 13 12 16 16 C 1.30968 * 109.45830 * 16.97644 * 15 14 13 17 17 C 1.48222 * 111.00084 * 169.99754 * 13 12 9 18 18 H 1.09002 * 110.26579 * 25.92904 * 17 13 12 19 19 C 1.53003 * 110.26986 * 263.96519 * 17 13 12 20 20 O 1.42902 * 109.46648 * 296.28103 * 19 17 13 21 21 H 0.96992 * 120.00568 * 359.97438 * 1 2 3 22 22 H 0.96704 * 114.00139 * 60.00049 * 11 9 7 23 23 H 1.08995 * 109.47009 * 60.00027 * 12 9 7 24 24 H 1.08997 * 109.47254 * 299.99964 * 12 9 7 25 25 H 1.09001 * 110.26556 * 334.06770 * 14 13 12 26 26 H 1.08994 * 110.26961 * 96.12472 * 14 13 12 27 27 H 1.07997 * 125.26941 * 196.96906 * 15 14 13 28 28 H 1.07997 * 125.26785 * 179.97438 * 16 15 14 29 29 H 1.08993 * 109.47376 * 56.27791 * 19 17 13 30 30 H 1.08994 * 109.47203 * 176.28366 * 19 17 13 31 31 H 0.96708 * 113.99928 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3964 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2454 -3.6620 -0.0005 13 7 1.5110 -4.9343 -0.0012 14 6 0.9623 -5.2316 1.3434 15 6 1.0502 -6.7332 1.4885 16 6 1.8776 -7.2104 0.5924 17 6 2.4257 -6.0756 -0.2415 18 1 3.4361 -5.8240 0.0807 19 6 2.4220 -6.4547 -1.7238 20 8 1.1190 -6.9081 -2.0962 21 1 -0.4850 0.8399 0.0004 22 1 0.9210 -2.5290 -1.9984 23 1 2.8720 -3.6042 0.8894 24 1 2.8721 -3.6043 -0.8905 25 1 1.5606 -4.7423 2.1120 26 1 -0.0759 -4.9061 1.4079 27 1 0.5139 -7.3217 2.2181 28 1 2.1295 -8.2533 0.4690 29 1 2.6884 -5.5837 -2.3224 30 1 3.1468 -7.2501 -1.8972 31 1 1.0428 -7.1657 -3.0252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341855465.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:33 Heat of formation + Delta-G solvation = -90.911379 kcal Electronic energy + Delta-G solvation = -14593.945437 eV Core-core repulsion = 12068.138541 eV Total energy + Delta-G solvation = -2525.806895 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70386 -37.69459 -36.96642 -34.24916 -33.27104 -30.92248 -29.55860 -26.60123 -25.45623 -22.83507 -21.37926 -20.23391 -19.05775 -18.24638 -16.91645 -16.69892 -16.46434 -16.04263 -15.49787 -15.11818 -14.78457 -14.14956 -14.00249 -13.85166 -13.26306 -13.07688 -12.86635 -12.71748 -12.62373 -12.14430 -11.98899 -11.70600 -11.05918 -10.76284 -10.72020 -10.35040 -10.04148 -9.11128 -8.13834 -6.41092 1.32008 1.39486 1.39999 1.52788 2.37516 3.06198 3.12748 3.47565 3.78141 3.89882 4.22058 4.31533 4.39183 4.46054 4.56251 4.61529 4.67129 4.73131 4.76653 4.96348 5.03699 5.41872 5.56808 5.69397 5.83408 5.98269 6.11809 6.19681 6.73013 7.10222 7.33597 7.61316 8.91126 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048643 B = 0.007687 C = 0.007422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.483742 B = 3641.514932 C = 3771.825685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.588 4.588 8 H 0.061 0.939 9 C 0.241 3.759 10 H 0.012 0.988 11 O -0.569 6.569 12 C 0.037 3.963 13 N -0.496 5.496 14 C 0.050 3.950 15 C -0.175 4.175 16 C -0.143 4.143 17 C 0.064 3.936 18 H 0.078 0.922 19 C 0.101 3.899 20 O -0.577 6.577 21 H 0.261 0.739 22 H 0.351 0.649 23 H 0.031 0.969 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 -13.224 -1.383 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.627 4.627 8 H 0.079 0.921 9 C 0.183 3.817 10 H 0.030 0.970 11 O -0.372 6.372 12 C -0.091 4.091 13 N -0.220 5.220 14 C -0.078 4.078 15 C -0.193 4.193 16 C -0.161 4.161 17 C -0.045 4.045 18 H 0.096 0.904 19 C 0.022 3.978 20 O -0.384 6.384 21 H 0.070 0.930 22 H 0.195 0.805 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.174 0.826 28 H 0.178 0.822 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.861 -12.968 -0.719 14.249 hybrid contribution 1.278 1.127 -0.175 1.713 sum 7.140 -11.841 -0.894 13.856 Atomic orbital electron populations 1.70246 1.07813 1.27341 1.48355 1.25961 0.95506 1.03122 0.93332 0.85447 0.79114 0.78867 0.77741 1.18527 1.20367 1.20489 1.22080 0.93565 0.92666 1.54353 0.92052 1.19080 0.87658 0.90092 0.84867 0.96977 1.86525 1.38601 1.96469 1.15642 1.22979 0.95986 0.90257 0.99924 1.65580 1.29591 1.01072 1.25746 1.22036 1.00199 0.95234 0.90288 1.23641 1.00222 0.94407 1.01078 1.23519 0.98110 0.99194 0.95277 1.21974 0.95812 0.90529 0.96138 0.90442 1.21985 0.84859 0.97763 0.93151 1.86588 1.31766 1.87341 1.32692 0.92975 0.80521 0.95070 0.91030 0.93495 0.92404 0.82639 0.82228 0.94423 0.90557 0.76424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.46 12.84 21.45 0.28 -55.18 16 2 C 0.02 1.32 5.40 84.66 0.46 1.78 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.59 -33.11 8.76 25.60 0.22 -32.89 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.24 12.99 2.90 29.85 0.09 13.08 16 10 H 0.01 0.75 7.75 -2.39 -0.02 0.74 16 11 O -0.57 -31.89 12.60 -148.98 -1.88 -33.76 16 12 C 0.04 1.59 4.26 86.30 0.37 1.96 16 13 N -0.50 -19.50 4.99 -871.27 -4.34 -23.84 16 14 C 0.05 1.88 6.08 85.43 0.52 2.39 16 15 C -0.18 -5.05 10.95 25.81 0.28 -4.77 16 16 C -0.14 -3.77 9.74 25.81 0.25 -3.52 16 17 C 0.06 1.91 2.81 44.05 0.12 2.04 16 18 H 0.08 2.17 7.79 -2.39 -0.02 2.15 16 19 C 0.10 2.58 6.98 71.98 0.50 3.08 16 20 O -0.58 -16.29 13.05 -148.98 -1.94 -18.24 16 21 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 22 H 0.35 17.50 9.04 -74.05 -0.67 16.83 16 23 H 0.03 1.31 7.64 -2.39 -0.02 1.29 16 24 H 0.07 2.90 8.08 -2.39 -0.02 2.88 16 25 H 0.05 1.76 7.49 -2.39 -0.02 1.74 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.39 7.02 9.12 -74.05 -0.68 6.35 16 Total: -1.00 -71.68 265.71 -3.26 -74.94 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.21 Total: 27.01 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 2.82 Total: -16.84 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -4.07 Total: -79.02 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -3.82 Total: -52.00 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -71.68 -3.26 -74.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341855465.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.968 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds