Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47066 * 270.00335 * 3 2 1 5 5 H 1.48498 * 109.46923 * 30.00121 * 3 2 1 6 6 H 1.48497 * 109.47241 * 150.00269 * 3 2 1 7 7 C 1.37876 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46972 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00480 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99825 * 180.02562 * 11 10 9 14 14 C 1.47141 * 120.87204 * 179.97438 * 13 11 10 15 15 C 1.53395 * 108.25086 * 129.42552 * 14 13 11 16 16 C 1.53237 * 108.89343 * 51.81209 * 15 14 13 17 17 O 1.42932 * 109.53519 * 300.95884 * 16 15 14 18 18 C 1.43105 * 113.96553 * 62.47379 * 17 16 15 19 19 H 0.97006 * 119.99734 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47424 * 60.00084 * 9 7 2 21 21 H 1.08999 * 109.47426 * 299.99136 * 9 7 2 22 22 H 1.08999 * 109.46937 * 59.99836 * 10 9 7 23 23 H 1.09002 * 109.46679 * 299.99398 * 10 9 7 24 24 H 1.09002 * 109.71449 * 249.12745 * 14 13 11 25 25 H 1.09001 * 109.71373 * 9.72490 * 14 13 11 26 26 H 1.09004 * 109.55645 * 171.68977 * 15 14 13 27 27 H 1.08999 * 109.55503 * 292.00745 * 15 14 13 28 28 H 1.09001 * 109.45421 * 180.94389 * 16 15 14 29 29 H 1.09000 * 109.44960 * 60.97420 * 16 15 14 30 30 H 1.08999 * 109.60708 * 184.61813 * 18 17 16 31 31 H 1.09003 * 109.60282 * 64.13403 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0021 13 7 2.1656 -6.1344 0.0018 14 6 1.4493 -7.4197 0.0030 15 6 2.0233 -8.2906 -1.1219 16 6 3.5481 -8.3436 -0.9795 17 8 4.0810 -7.0192 -1.0499 18 6 3.6357 -6.1568 0.0018 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 2.8719 -3.6043 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 1.5900 -7.9182 0.9621 25 1 0.3868 -7.2487 -0.1701 26 1 1.6136 -9.2980 -1.0485 27 1 1.7618 -7.8581 -2.0876 28 1 3.9671 -8.9469 -1.7848 29 1 3.8077 -8.7889 -0.0191 30 1 4.0168 -5.1493 -0.1653 31 1 3.9957 -6.5322 0.9597 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556549120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = -88.735997 kcal Electronic energy + Delta-G solvation = -14296.929095 eV Core-core repulsion = 11771.216531 eV Total energy + Delta-G solvation = -2525.712564 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.04850 -38.03605 -34.25637 -33.54970 -32.58692 -30.78688 -26.64161 -25.61831 -25.05186 -22.27862 -20.75845 -18.86470 -17.24779 -16.61232 -15.98251 -15.50963 -15.30576 -15.16724 -14.44689 -14.29076 -13.69289 -13.17465 -13.05407 -12.20120 -12.14662 -11.58403 -11.39507 -11.14006 -11.00060 -10.92323 -10.58304 -10.02311 -9.97069 -9.64670 -9.20669 -9.03370 -8.63751 -8.31639 -5.95719 -4.00271 3.09290 3.15737 3.34312 3.40367 3.43021 3.74934 4.47411 4.65355 4.73008 4.95434 5.04313 5.14489 5.29880 5.35435 5.39344 5.50581 5.61429 5.89753 6.00293 6.15491 6.18831 6.54509 6.86276 6.93602 7.62837 7.74321 7.85192 8.06751 8.37578 8.65664 9.07831 9.63372 11.15288 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059296 B = 0.006348 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.092384 B = 4409.840309 C = 4770.931025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.132 4.132 11 C 0.518 3.482 12 O -0.529 6.529 13 N -0.647 5.647 14 C 0.105 3.895 15 C -0.169 4.169 16 C 0.060 3.940 17 O -0.388 6.388 18 C 0.278 3.722 19 H 0.261 0.739 20 H 0.024 0.976 21 H 0.024 0.976 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.122 0.878 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.869 -16.057 -0.036 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.171 4.171 11 C 0.308 3.692 12 O -0.403 6.403 13 N -0.391 5.391 14 C -0.018 4.018 15 C -0.208 4.208 16 C -0.017 4.017 17 O -0.304 6.304 18 C 0.118 3.882 19 H 0.071 0.929 20 H 0.042 0.958 21 H 0.042 0.958 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.202 -15.863 -0.191 17.423 hybrid contribution 0.307 0.710 0.186 0.796 sum 7.510 -15.153 -0.004 16.912 Atomic orbital electron populations 1.70002 1.06080 1.26601 1.50179 1.25025 0.94823 0.99249 0.95265 0.86579 0.79758 0.83456 0.78087 1.20651 1.21229 1.19864 1.21213 0.92944 0.90956 1.51443 0.92545 1.18914 0.93151 0.89331 0.98669 1.21946 1.00888 0.91834 1.02466 1.21603 0.88453 0.85308 0.73803 1.90659 1.14395 1.87092 1.48160 1.49094 1.07544 1.06528 1.75954 1.21573 0.98881 0.83773 0.97591 1.22561 0.96781 1.00854 1.00575 1.22556 0.93155 0.84118 1.01838 1.88084 1.68709 1.22265 1.51317 1.22931 0.78793 0.96287 0.90230 0.92938 0.95787 0.95769 0.90133 0.89897 0.91873 0.88727 0.89968 0.90478 0.88749 0.93005 0.86008 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.72 4.00 -27.88 -0.11 -2.83 16 11 C 0.52 10.40 7.71 -10.98 -0.08 10.32 16 12 O -0.53 -12.75 15.44 5.56 0.09 -12.66 16 13 N -0.65 -10.07 3.08 -177.94 -0.55 -10.62 16 14 C 0.10 1.36 6.52 -3.49 -0.02 1.34 16 15 C -0.17 -1.75 6.33 -26.40 -0.17 -1.91 16 16 C 0.06 0.58 6.80 37.28 0.25 0.84 16 17 O -0.39 -4.97 10.86 -35.23 -0.38 -5.35 16 18 C 0.28 3.51 7.31 60.14 0.44 3.95 16 19 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 20 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 21 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 22 H 0.08 1.49 8.00 -51.93 -0.42 1.07 16 23 H 0.08 1.59 7.66 -51.93 -0.40 1.19 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.41 7.07 -51.93 -0.37 1.04 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.12 1.50 6.02 -51.93 -0.31 1.19 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 260.87 15.07 3.93 3.93 Total: -1.00 -34.09 260.87 -5.83 -39.93 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -4.41 Total: -3.93 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -0.22 Total: -1.16 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.19 Total: -37.47 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.30 Total: -18.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.09 -5.83 -39.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556549120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.808 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds