Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47066 * 270.00335 * 3 2 1 5 5 H 1.48498 * 109.46923 * 30.00121 * 3 2 1 6 6 H 1.48497 * 109.47241 * 150.00269 * 3 2 1 7 7 C 1.37876 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46972 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00480 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99825 * 180.02562 * 11 10 9 14 14 C 1.47141 * 120.87204 * 179.97438 * 13 11 10 15 15 C 1.53395 * 108.25086 * 129.42552 * 14 13 11 16 16 C 1.53237 * 108.89343 * 51.81209 * 15 14 13 17 17 O 1.42932 * 109.53519 * 300.95884 * 16 15 14 18 18 C 1.43105 * 113.96553 * 62.47379 * 17 16 15 19 19 H 0.97006 * 119.99734 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47424 * 60.00084 * 9 7 2 21 21 H 1.08999 * 109.47426 * 299.99136 * 9 7 2 22 22 H 1.08999 * 109.46937 * 59.99836 * 10 9 7 23 23 H 1.09002 * 109.46679 * 299.99398 * 10 9 7 24 24 H 1.09002 * 109.71449 * 249.12745 * 14 13 11 25 25 H 1.09001 * 109.71373 * 9.72490 * 14 13 11 26 26 H 1.09004 * 109.55645 * 171.68977 * 15 14 13 27 27 H 1.08999 * 109.55503 * 292.00745 * 15 14 13 28 28 H 1.09001 * 109.45421 * 180.94389 * 16 15 14 29 29 H 1.09000 * 109.44960 * 60.97420 * 16 15 14 30 30 H 1.08999 * 109.60708 * 184.61813 * 18 17 16 31 31 H 1.09003 * 109.60282 * 64.13403 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0021 13 7 2.1656 -6.1344 0.0018 14 6 1.4493 -7.4197 0.0030 15 6 2.0233 -8.2906 -1.1219 16 6 3.5481 -8.3436 -0.9795 17 8 4.0810 -7.0192 -1.0499 18 6 3.6357 -6.1568 0.0018 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 2.8719 -3.6043 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 1.5900 -7.9182 0.9621 25 1 0.3868 -7.2487 -0.1701 26 1 1.6136 -9.2980 -1.0485 27 1 1.7618 -7.8581 -2.0876 28 1 3.9671 -8.9469 -1.7848 29 1 3.8077 -8.7889 -0.0191 30 1 4.0168 -5.1493 -0.1653 31 1 3.9957 -6.5322 0.9597 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556549120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = -114.104776 kcal Electronic energy + Delta-G solvation = -14298.029167 eV Core-core repulsion = 11771.216531 eV Total energy + Delta-G solvation = -2526.812637 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.32079 -39.31935 -35.67452 -35.41651 -33.83035 -32.60372 -28.25693 -26.74689 -26.43352 -23.91721 -22.13053 -20.19814 -18.96284 -17.90744 -17.59020 -16.78490 -16.54954 -16.43851 -16.16618 -15.46000 -15.11951 -14.55240 -14.24104 -14.10025 -13.80390 -13.22830 -12.82350 -12.50389 -12.45166 -12.30737 -11.96218 -11.89471 -11.59771 -11.31872 -10.96141 -10.75011 -10.57163 -9.87066 -8.18197 -6.32562 1.42959 1.45889 1.56212 1.56892 1.91540 2.43459 2.86344 3.15012 3.63986 3.85083 3.90357 4.06119 4.26595 4.36191 4.43443 4.48009 4.55217 4.56564 4.78526 4.91403 5.02033 5.15139 5.42307 5.50446 5.59809 5.83548 6.05755 6.16071 6.23659 6.85389 7.13969 7.37930 8.94703 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059296 B = 0.006348 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.092384 B = 4409.840309 C = 4770.931025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.042 3.958 10 C -0.119 4.119 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.639 5.639 14 C 0.096 3.904 15 C -0.161 4.161 16 C 0.055 3.945 17 O -0.404 6.404 18 C 0.271 3.729 19 H 0.263 0.737 20 H -0.020 1.020 21 H -0.016 1.016 22 H 0.109 0.891 23 H 0.102 0.898 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.115 0.885 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.776 -16.987 0.285 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.005 3.995 10 C -0.158 4.158 11 C 0.306 3.694 12 O -0.464 6.464 13 N -0.380 5.380 14 C -0.026 4.026 15 C -0.199 4.199 16 C -0.021 4.021 17 O -0.320 6.320 18 C 0.112 3.888 19 H 0.072 0.928 20 H -0.002 1.002 21 H 0.002 0.998 22 H 0.127 0.873 23 H 0.120 0.880 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.133 0.867 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.095 0.905 30 H 0.141 0.859 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.177 -16.853 0.126 19.688 hybrid contribution -0.601 0.874 0.076 1.064 sum 9.576 -15.979 0.203 18.630 Atomic orbital electron populations 1.70185 1.08384 1.27846 1.51467 1.26154 0.95717 1.04014 0.94554 0.85295 0.78704 0.77579 0.78508 1.19780 1.21170 1.17732 1.21707 0.94059 0.91472 1.50853 0.90424 1.18697 0.93669 0.92461 0.94697 1.21702 0.99458 0.89966 1.04721 1.21416 0.87682 0.86588 0.73718 1.90638 1.16605 1.87970 1.51198 1.49095 1.09140 1.05988 1.73805 1.21832 0.97420 0.83097 1.00270 1.22542 0.97688 1.01661 0.98050 1.22831 0.92162 0.83024 1.04121 1.88072 1.68723 1.23659 1.51543 1.23252 0.76504 0.97108 0.91894 0.92837 1.00163 0.99759 0.87269 0.87963 0.89068 0.91499 0.86706 0.92697 0.86690 0.90516 0.85897 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.12 13.29 21.45 0.28 -59.84 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.98 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.40 4.26 29.85 0.13 2.53 16 10 C -0.12 -4.91 4.00 29.85 0.12 -4.79 16 11 C 0.52 21.05 7.71 87.66 0.68 21.73 16 12 O -0.58 -29.79 15.44 -3.03 -0.05 -29.83 16 13 N -0.64 -19.08 3.08 -935.24 -2.88 -21.96 16 14 C 0.10 2.36 6.52 86.39 0.56 2.93 16 15 C -0.16 -2.93 6.33 30.81 0.19 -2.74 16 16 C 0.05 0.85 6.80 72.06 0.49 1.34 16 17 O -0.40 -9.07 10.86 -148.98 -1.62 -10.69 16 18 C 0.27 6.04 7.31 127.67 0.93 6.97 16 19 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 20 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 21 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 22 H 0.11 3.85 8.00 -2.39 -0.02 3.83 16 23 H 0.10 3.80 7.66 -2.39 -0.02 3.79 16 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 2.04 7.07 -2.39 -0.02 2.02 16 26 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.12 2.67 6.02 -2.39 -0.01 2.66 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -77.89 260.87 2.67 -75.23 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.10 Total: 3.49 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 3.80 Total: -2.89 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -2.60 Total: -81.80 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.66 Total: -40.53 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -77.89 2.67 -75.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556549120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.877 kcal (2) G-P(sol) polarization free energy of solvation -77.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds