Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47914 * 2 1 4 4 O 1.21293 * 119.99482 * 95.02260 * 3 2 1 5 5 N 1.34777 * 120.00290 * 275.02697 * 3 2 1 6 6 C 1.37092 * 119.99729 * 180.27555 * 5 3 2 7 7 H 1.08002 * 120.00496 * 359.72414 * 6 5 3 8 8 C 1.38958 * 120.00096 * 179.72242 * 6 5 3 9 9 N 1.31414 * 119.99347 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47274 * 89.99972 * 10 8 6 12 12 H 1.48505 * 109.46713 * 210.00050 * 10 8 6 13 13 H 1.48502 * 109.46813 * 329.99470 * 10 8 6 14 14 C 1.53090 * 109.48221 * 120.02753 * 2 1 3 15 15 C 1.53175 * 109.16029 * 177.60539 * 14 2 1 16 16 C 1.53169 * 109.03879 * 303.01408 * 15 14 2 17 17 C 1.53090 * 109.16304 * 56.98675 * 16 15 14 18 18 O 1.42904 * 109.41292 * 302.38870 * 17 16 15 19 19 H 1.09002 * 109.47240 * 60.00237 * 1 2 3 20 20 H 1.08998 * 109.47079 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47255 * 299.99475 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 23 23 H 0.97004 * 119.99790 * 179.97438 * 9 8 6 24 24 H 1.09005 * 109.51640 * 297.50769 * 14 2 1 25 25 H 1.08995 * 109.52448 * 57.63199 * 14 2 1 26 26 H 1.08993 * 109.54565 * 62.88784 * 15 14 2 27 27 H 1.09007 * 109.54280 * 183.06113 * 15 14 2 28 28 H 1.09005 * 109.52952 * 176.89139 * 16 15 14 29 29 H 1.08997 * 109.52693 * 297.01455 * 16 15 14 30 30 H 1.09000 * 109.48284 * 62.36958 * 17 16 15 31 31 H 1.08997 * 109.48723 * 182.41003 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 2.3214 1.9618 1.0464 5 7 2.1608 2.0902 -1.1627 6 6 2.6234 3.3808 -1.1630 7 1 2.8807 3.8626 -0.2313 8 6 2.7612 4.0691 -2.3623 9 7 2.4485 3.4827 -3.4960 10 14 3.3920 5.8273 -2.3629 11 1 4.8721 5.8221 -2.4826 12 1 2.8050 6.5634 -3.5114 13 1 3.0002 6.4942 -1.0952 14 6 2.0406 -0.7222 1.2495 15 6 3.5711 -0.7705 1.2122 16 6 4.0179 -1.4596 -0.0807 17 6 3.4310 -0.7089 -1.2789 18 8 2.0068 -0.6741 -1.1664 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.9301 1.6574 -1.9995 23 1 2.5444 3.9633 -4.3332 24 1 1.7147 -0.1843 2.1398 25 1 1.6436 -1.7371 1.2715 26 1 3.9687 0.2439 1.2410 27 1 3.9393 -1.3309 2.0716 28 1 5.1062 -1.4491 -0.1419 29 1 3.6628 -2.4901 -0.0858 30 1 3.8193 0.3095 -1.2956 31 1 3.7104 -1.2198 -2.2004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627706094.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = -99.052576 kcal Electronic energy + Delta-G solvation = -15186.587461 eV Core-core repulsion = 12660.427537 eV Total energy + Delta-G solvation = -2526.159924 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.91201 -36.92339 -34.18099 -33.08983 -32.22776 -31.09175 -27.38716 -25.30994 -23.83210 -22.40225 -20.69731 -18.55347 -17.70277 -16.59951 -15.63045 -14.78018 -14.51871 -14.34245 -13.77968 -13.56607 -13.20553 -13.09439 -12.26586 -11.92121 -11.77606 -11.62183 -11.52389 -11.22773 -11.08724 -10.61187 -10.40540 -10.36148 -10.22456 -9.99275 -9.51278 -9.21803 -8.10861 -7.95951 -6.42493 -3.83711 3.15669 3.25106 3.30899 3.82368 4.10769 4.24266 4.92958 5.14139 5.19101 5.25427 5.36552 5.40690 5.73991 5.89556 5.96356 5.99869 6.07025 6.18414 6.26172 6.30868 6.36096 6.45610 6.48981 6.62814 6.77916 7.53331 7.60528 8.05944 8.61157 9.15519 9.54931 10.05576 10.74125 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040580 B = 0.009839 C = 0.009678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.823650 B = 2845.238584 C = 2892.490107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.105 3.895 3 C 0.421 3.579 4 O -0.594 6.594 5 N -0.549 5.549 6 C -0.305 4.305 7 H 0.103 0.897 8 C 0.025 3.975 9 N -0.894 5.894 10 Si 0.929 3.071 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.269 1.269 14 C -0.121 4.121 15 C -0.125 4.125 16 C -0.152 4.152 17 C 0.053 3.947 18 O -0.372 6.372 19 H 0.066 0.934 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.398 0.602 23 H 0.272 0.728 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 -8.248 3.185 8.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.062 3.938 3 C 0.206 3.794 4 O -0.480 6.480 5 N -0.184 5.184 6 C -0.434 4.434 7 H 0.120 0.880 8 C -0.177 4.177 9 N -0.535 5.535 10 Si 0.756 3.244 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.159 4.159 15 C -0.162 4.162 16 C -0.190 4.190 17 C -0.024 4.024 18 O -0.291 6.291 19 H 0.085 0.915 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.232 0.768 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.098 -7.881 3.524 8.634 hybrid contribution 0.414 0.728 -0.463 0.957 sum 0.512 -7.153 3.061 7.797 Atomic orbital electron populations 1.21683 0.91771 1.02326 1.03106 1.21699 0.95487 0.90280 0.86322 1.20308 0.85741 0.88334 0.84998 1.90498 1.55990 1.69960 1.31558 1.41972 1.55856 1.13002 1.07577 1.19749 1.40126 0.88780 0.94791 0.87950 1.25298 0.97440 1.00311 0.94697 1.69641 1.47737 1.38148 0.97961 0.85872 0.78800 0.81715 0.77995 1.20369 1.20847 1.19387 1.21855 0.96188 0.99724 0.98121 1.21601 0.95901 1.02006 0.96690 1.22158 1.00622 0.99870 0.96317 1.22652 0.81219 1.00924 0.97595 1.87898 1.21173 1.77108 1.42952 0.91498 0.91789 0.90894 0.76751 0.91766 0.90234 0.91716 0.90398 0.92233 0.91422 0.91742 0.91706 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.83 37.16 0.33 -1.91 16 2 C 0.10 2.06 1.04 -91.72 -0.10 1.96 16 3 C 0.42 10.25 4.77 -10.98 -0.05 10.20 16 4 O -0.59 -16.17 14.70 5.55 0.08 -16.08 16 5 N -0.55 -14.36 4.35 -10.96 -0.05 -14.41 16 6 C -0.30 -8.59 9.68 -14.93 -0.14 -8.73 16 7 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 8 C 0.03 0.67 5.50 -17.46 -0.10 0.58 16 9 N -0.89 -24.58 13.05 55.50 0.72 -23.86 16 10 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 C -0.12 -2.09 4.58 -26.59 -0.12 -2.21 16 15 C -0.12 -2.10 5.75 -26.55 -0.15 -2.25 16 16 C -0.15 -2.33 6.14 -26.60 -0.16 -2.49 16 17 C 0.05 0.95 6.48 37.20 0.24 1.19 16 18 O -0.37 -7.21 9.58 -35.23 -0.34 -7.55 16 19 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 22 H 0.40 10.37 7.32 -40.82 -0.30 10.07 16 23 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.08 1.42 7.78 -51.93 -0.40 1.01 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.56 6.72 -51.93 -0.35 1.22 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.36 6.51 -51.93 -0.34 1.02 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 254.25 15.07 3.83 3.83 Total: -1.00 -30.14 254.25 -5.31 -35.45 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.28 Total: 10.22 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.26 Total: -3.67 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.68 Total: -38.27 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.26 Total: -23.63 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.14 -5.31 -35.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627706094.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.602 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds