Wall clock time and date at job start Mon Mar 30 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.34781 * 119.99732 * 274.99921 * 4 2 1 6 6 O 1.21686 * 119.99747 * 359.97438 * 5 4 2 7 7 C 1.46368 * 119.99906 * 180.02562 * 5 4 2 8 8 H 1.08002 * 120.00471 * 359.97438 * 7 5 4 9 9 C 1.40049 * 119.99863 * 180.02562 * 7 5 4 10 10 N 1.30663 * 120.00079 * 359.97438 * 9 7 5 11 11 Si 1.86805 * 119.99959 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46924 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.46895 * 119.99623 * 11 9 7 14 14 H 1.48496 * 109.47135 * 240.00014 * 11 9 7 15 15 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 16 16 H 1.09001 * 110.33052 * 185.69863 * 15 2 1 17 17 C 1.54481 * 110.37362 * 63.45508 * 15 2 1 18 18 C 1.54510 * 104.06173 * 217.18759 * 17 15 2 19 19 C 1.54484 * 104.06150 * 359.97438 * 18 17 15 20 20 O 1.44418 * 110.37471 * 307.95148 * 15 2 1 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 25 25 H 0.97003 * 120.00283 * 180.02562 * 10 9 7 26 26 H 1.09006 * 110.50785 * 335.82747 * 17 15 2 27 27 H 1.09000 * 110.51259 * 98.40181 * 17 15 2 28 28 H 1.09001 * 110.51462 * 118.63919 * 18 17 15 29 29 H 1.09001 * 110.51051 * 241.35376 * 18 17 15 30 30 H 1.09003 * 110.36640 * 142.81350 * 19 18 17 31 31 H 1.08998 * 110.36874 * 265.03354 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8582 1.1625 2.4116 7 6 2.6356 -0.7082 3.5521 8 1 2.8925 -1.7561 3.5036 9 6 2.7689 -0.0097 4.7586 10 7 2.4576 1.2580 4.8174 11 14 3.3916 -0.8903 6.2838 12 1 3.6716 -2.3112 5.9553 13 1 4.6376 -0.2366 6.7587 14 1 2.3600 -0.8233 7.3499 15 6 2.0399 -0.7213 -1.2493 16 1 3.1251 -0.8182 -1.2142 17 6 1.6090 0.0393 -2.5229 18 6 1.2883 -1.0804 -3.5383 19 6 1.5641 -2.3849 -2.7581 20 8 1.4225 -2.0216 -1.3663 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 2.2491 -1.6318 1.1526 25 1 2.5503 1.7419 5.6530 26 1 0.7222 0.6419 -2.3262 27 1 2.4227 0.6664 -2.8870 28 1 0.2431 -1.0313 -3.8436 29 1 1.9444 -1.0086 -4.4058 30 1 0.8350 -3.1491 -3.0271 31 1 2.5754 -2.7395 -2.9573 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035735013.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:06 Heat of formation + Delta-G solvation = -95.397670 kcal Electronic energy + Delta-G solvation = -14485.931686 eV Core-core repulsion = 11959.930250 eV Total energy + Delta-G solvation = -2526.001436 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.48136 -37.14606 -33.96101 -32.32120 -31.96584 -30.00973 -27.52650 -26.06155 -23.69573 -21.58045 -20.27999 -19.18104 -17.26130 -16.26583 -15.65082 -15.28800 -15.11621 -14.22439 -13.93613 -13.73232 -12.84522 -12.68926 -12.23046 -11.76875 -11.66402 -11.42624 -11.28792 -11.09732 -10.98670 -10.72374 -10.53739 -10.38196 -10.19861 -10.11055 -9.53378 -8.81024 -7.54364 -7.40933 -6.12936 -4.57560 3.16669 3.24720 3.29695 4.03653 4.16485 4.63004 4.67964 4.73330 4.97700 5.04096 5.33240 5.40425 5.60133 5.64306 5.74106 5.80166 5.87466 5.97714 6.06162 6.12111 6.31530 6.45746 6.70723 6.98033 7.07698 7.49463 8.03665 8.21051 8.42023 9.08718 9.64085 10.66427 10.85831 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062321 B = 0.006942 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.182169 B = 4032.499163 C = 4290.294677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.084 0.916 4 N -0.759 5.759 5 C 0.556 3.444 6 O -0.583 6.583 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.087 3.913 10 N -0.770 5.770 11 Si 0.907 3.093 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.069 3.931 16 H 0.070 0.930 17 C -0.152 4.152 18 C -0.153 4.153 19 C 0.043 3.957 20 O -0.363 6.363 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.383 0.617 25 H 0.267 0.733 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 -5.292 -13.085 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.102 0.898 4 N -0.414 5.414 5 C 0.359 3.641 6 O -0.466 6.466 7 C -0.582 4.582 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.399 5.399 11 Si 0.731 3.269 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C 0.011 3.989 16 H 0.088 0.912 17 C -0.190 4.190 18 C -0.191 4.191 19 C -0.034 4.034 20 O -0.282 6.282 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.215 0.785 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.129 -4.361 -12.750 13.523 hybrid contribution 0.516 -0.792 0.472 1.056 sum -0.614 -5.153 -12.278 13.330 Atomic orbital electron populations 1.22108 0.96583 1.01688 1.00916 1.20521 0.93785 0.96438 0.83870 0.89809 1.46138 1.72877 1.13042 1.09342 1.18219 0.77742 0.86367 0.81723 1.90583 1.55001 1.16461 1.84534 1.20941 1.46688 0.97186 0.93370 0.91433 1.25704 0.93342 0.94451 0.99680 1.70033 1.35523 1.08226 1.26077 0.86338 0.78745 0.80337 0.81452 1.18790 1.20215 1.20207 1.23392 0.96957 0.83192 0.95394 0.91248 1.23030 1.02712 0.98428 0.94836 1.22910 1.02275 0.95257 0.98651 1.23366 1.00806 0.96842 0.82419 1.89209 1.79533 1.34455 1.24984 0.92152 0.93528 0.92504 0.78495 0.92267 0.89925 0.90665 0.90897 0.90955 0.89551 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.06 37.16 0.34 -2.60 16 2 C 0.16 3.21 2.51 -67.93 -0.17 3.04 16 3 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 4 N -0.76 -17.88 5.07 -55.21 -0.28 -18.16 16 5 C 0.56 16.21 7.71 -12.99 -0.10 16.11 16 6 O -0.58 -19.08 14.68 5.20 0.08 -19.00 16 7 C -0.54 -15.84 9.54 -35.63 -0.34 -16.18 16 8 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 9 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 10 N -0.77 -23.50 11.83 55.55 0.66 -22.84 16 11 Si 0.91 20.58 29.56 -169.99 -5.02 15.56 16 12 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.07 1.09 3.11 -25.95 -0.08 1.00 16 16 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.15 -1.89 6.47 -25.16 -0.16 -2.05 16 18 C -0.15 -1.57 7.09 -25.16 -0.18 -1.75 16 19 C 0.04 0.49 7.63 37.94 0.29 0.78 16 20 O -0.36 -5.74 10.33 -35.23 -0.36 -6.11 16 21 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 22 H 0.05 0.74 6.29 -51.93 -0.33 0.41 16 23 H 0.06 1.07 7.54 -51.93 -0.39 0.68 16 24 H 0.38 8.37 8.50 -40.82 -0.35 8.02 16 25 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 26 H 0.08 1.04 6.01 -51.93 -0.31 0.73 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 260.46 15.07 3.93 3.93 Total: -1.00 -34.22 260.46 -5.79 -40.00 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.28 Total: 5.86 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -0.50 Total: 0.77 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.38 Total: -41.00 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.29 Total: -25.11 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.22 -5.79 -40.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035735013.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.394 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds