Wall clock time and date at job start Mon Mar 30 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99822 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00192 * 3 2 1 5 5 C 1.53780 * 113.61185 * 272.49628 * 4 3 2 6 6 C 1.53786 * 87.07859 * 220.01881 * 5 4 3 7 7 O 1.42901 * 113.68627 * 139.99022 * 6 5 4 8 8 C 1.53781 * 87.08126 * 25.43651 * 6 5 4 9 9 C 1.34777 * 120.00054 * 180.02562 * 2 1 3 10 10 O 1.21684 * 119.99541 * 179.97438 * 9 2 1 11 11 C 1.46370 * 120.00158 * 359.97438 * 9 2 1 12 12 H 1.08002 * 120.00306 * 0.02562 * 11 9 2 13 13 C 1.40046 * 120.00294 * 180.02562 * 11 9 2 14 14 N 1.30679 * 119.99681 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00379 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46628 * 59.99925 * 15 13 11 17 17 H 1.48499 * 109.47104 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46876 * 300.00077 * 15 13 11 19 19 H 1.09007 * 109.47177 * 89.99828 * 1 2 3 20 20 H 1.09002 * 109.47019 * 209.99587 * 1 2 3 21 21 H 1.09001 * 109.47429 * 329.99755 * 1 2 3 22 22 H 1.08993 * 109.47452 * 150.00270 * 3 2 1 23 23 H 1.09000 * 109.47175 * 30.00060 * 3 2 1 24 24 H 1.09003 * 112.85166 * 43.80692 * 4 3 2 25 25 H 1.08996 * 113.61507 * 334.56463 * 5 4 3 26 26 H 1.08996 * 113.61313 * 105.47850 * 5 4 3 27 27 H 1.08997 * 113.62080 * 270.88560 * 6 5 4 28 28 H 0.96704 * 113.99715 * 82.46899 * 7 6 5 29 29 H 1.09004 * 113.61172 * 220.02010 * 8 6 5 30 30 H 1.09000 * 113.62178 * 89.11207 * 8 6 5 31 31 H 0.96998 * 119.99741 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.7453 1.1343 -2.0438 6 6 3.9634 2.5110 -2.6935 7 8 5.3240 2.9472 -2.6713 8 6 3.1104 3.0958 -1.5554 9 6 2.1389 -1.1672 -0.0005 10 8 3.3558 -1.1671 -0.0010 11 6 1.4071 -2.4348 -0.0005 12 1 0.3271 -2.4349 -0.0005 13 6 2.1073 -3.6477 -0.0005 14 7 3.4141 -3.6476 -0.0010 15 14 1.1734 -5.2655 0.0002 16 1 0.3192 -5.3443 -1.2120 17 1 2.1385 -6.3941 -0.0005 18 1 0.3201 -5.3438 1.2131 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5139 22 1 3.1499 1.1385 0.5137 23 1 1.6084 2.0284 0.5138 24 1 1.5791 1.5884 -2.0833 25 1 4.4980 0.8795 -1.2978 26 1 3.5733 0.3342 -2.7637 27 1 3.5040 2.6074 -3.6773 28 1 5.8656 2.5828 -3.3848 29 1 2.4258 3.8791 -1.8810 30 1 3.6895 3.3771 -0.6758 31 1 3.8991 -4.4876 -0.0007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084452602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:52 Heat of formation + Delta-G solvation = -66.772534 kcal Electronic energy + Delta-G solvation = -14547.243461 eV Core-core repulsion = 12022.483305 eV Total energy + Delta-G solvation = -2524.760157 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.12907 -37.28232 -34.87929 -33.45330 -32.40010 -28.29936 -25.94931 -25.31977 -24.74333 -22.06591 -19.20486 -18.97965 -17.19276 -16.37259 -15.56000 -15.07777 -14.60342 -14.18080 -13.99320 -13.46232 -12.93063 -12.38283 -11.96923 -11.59799 -11.49005 -11.32424 -11.23204 -11.17189 -10.88517 -10.83462 -10.33998 -10.18317 -10.10720 -9.72068 -9.39660 -8.82510 -7.52530 -7.13908 -6.16495 -4.61730 3.15666 3.20790 3.22322 4.10243 4.42605 4.60476 4.64241 5.02010 5.12539 5.20715 5.31905 5.72794 5.83785 5.96534 5.99618 6.07934 6.17461 6.23658 6.42707 6.54803 6.56780 6.61698 6.78314 6.98771 7.46426 7.68236 7.87356 8.17986 8.39848 9.04741 9.48064 10.61370 10.80907 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043572 B = 0.008201 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.461072 B = 3413.330617 C = 3827.539380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.649 5.649 3 C 0.140 3.860 4 C -0.120 4.120 5 C -0.141 4.141 6 C 0.067 3.933 7 O -0.564 6.564 8 C -0.122 4.122 9 C 0.558 3.442 10 O -0.572 6.572 11 C -0.546 4.546 12 H 0.070 0.930 13 C 0.088 3.912 14 N -0.768 5.768 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.268 1.268 19 H 0.028 0.972 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.073 0.927 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.373 0.627 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 8.202 -3.915 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.387 5.387 3 C 0.015 3.985 4 C -0.140 4.140 5 C -0.179 4.179 6 C 0.008 3.992 7 O -0.369 6.369 8 C -0.160 4.160 9 C 0.363 3.637 10 O -0.454 6.454 11 C -0.583 4.583 12 H 0.088 0.912 13 C -0.132 4.132 14 N -0.396 5.396 15 Si 0.730 3.270 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 H 0.047 0.953 20 H 0.089 0.911 21 H 0.058 0.942 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.220 0.780 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.734 8.405 -3.371 9.460 hybrid contribution -0.518 -1.142 -0.629 1.403 sum -3.252 7.263 -4.000 8.907 Atomic orbital electron populations 1.21378 0.82456 1.00925 0.99396 1.47990 1.04985 1.05529 1.80202 1.20981 0.97684 0.86172 0.93641 1.22740 0.97307 0.94687 0.99301 1.23531 0.98229 0.95464 1.00635 1.23513 0.82003 0.96163 0.97473 1.86495 1.21694 1.73476 1.55282 1.23062 0.97484 0.96915 0.98499 1.18192 0.87025 0.82198 0.76287 1.90583 1.13862 1.86243 1.54728 1.20993 0.93631 0.89435 1.54210 0.91181 1.25721 0.94597 1.00204 0.92665 1.70014 1.06990 1.27249 1.35389 0.86484 0.79877 0.81276 0.79407 1.19349 1.20590 1.19300 0.95345 0.91126 0.94194 0.90838 0.93007 0.89853 0.88515 0.92003 0.90936 0.78017 0.91629 0.89415 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 10.19 59.85 0.61 2.53 16 2 N -0.65 -14.84 2.87 -183.24 -0.53 -15.37 16 3 C 0.14 2.76 5.29 -4.04 -0.02 2.74 16 4 C -0.12 -2.11 3.96 -89.80 -0.36 -2.47 16 5 C -0.14 -2.67 6.89 -25.92 -0.18 -2.85 16 6 C 0.07 1.02 5.21 -25.92 -0.14 0.88 16 7 O -0.56 -8.50 13.67 -35.23 -0.48 -8.98 16 8 C -0.12 -1.81 7.47 -25.92 -0.19 -2.00 16 9 C 0.56 15.78 7.61 -12.99 -0.10 15.68 16 10 O -0.57 -18.07 13.86 5.20 0.07 -17.99 16 11 C -0.55 -15.36 8.74 -35.63 -0.31 -15.67 16 12 H 0.07 1.80 6.00 -52.49 -0.31 1.49 16 13 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 14 N -0.77 -22.94 11.83 55.55 0.66 -22.28 16 15 Si 0.90 20.13 29.56 -169.99 -5.02 15.11 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 20 H 0.07 1.36 6.09 -51.93 -0.32 1.05 16 21 H 0.04 0.62 7.89 -51.93 -0.41 0.21 16 22 H 0.07 1.63 7.12 -51.93 -0.37 1.26 16 23 H 0.05 0.87 7.89 -51.93 -0.41 0.46 16 24 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 25 H 0.10 2.14 7.75 -51.93 -0.40 1.73 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.37 4.00 9.12 45.56 0.42 4.41 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.35 8.10 -51.93 -0.42 0.92 16 31 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 262.95 15.07 3.96 3.96 Total: -1.00 -33.95 262.95 -5.60 -39.54 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.48 Total: 4.82 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.78 Total: 1.19 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.13 Total: -37.65 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.41 Total: -26.97 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.95 -5.60 -39.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084452602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.228 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds