Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00017 * 2 1 4 4 O 1.20826 * 120.00086 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00319 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.64534 * 269.07508 * 5 3 2 7 7 C 1.54330 * 110.71974 * 32.21784 * 5 3 2 8 8 N 1.47025 * 107.40401 * 140.65328 * 7 5 3 9 9 C 1.36939 * 125.64774 * 181.09901 * 8 7 5 10 10 H 1.08000 * 119.99678 * 180.02562 * 9 8 7 11 11 C 1.38804 * 119.99771 * 0.03166 * 9 8 7 12 12 N 1.31614 * 120.00423 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99829 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47081 * 59.99643 * 13 11 9 15 15 H 1.48496 * 109.47372 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46946 * 300.00053 * 13 11 9 17 17 C 1.47745 * 108.52819 * 1.18551 * 8 7 5 18 18 C 1.54916 * 104.84087 * 335.74757 * 17 8 7 19 19 H 1.08995 * 111.03215 * 155.18596 * 18 17 8 20 20 C 1.52998 * 111.00174 * 279.02336 * 18 17 8 21 21 H 1.08997 * 109.47334 * 299.99836 * 1 2 3 22 22 H 1.08996 * 109.46829 * 60.00634 * 1 2 3 23 23 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.88287 * 260.15101 * 7 5 3 25 25 H 1.09000 * 109.87773 * 21.16179 * 7 5 3 26 26 H 0.97002 * 120.00099 * 179.97438 * 12 11 9 27 27 H 1.09000 * 110.29047 * 216.94165 * 17 8 7 28 28 H 1.09000 * 110.43709 * 94.62531 * 17 8 7 29 29 H 1.09003 * 109.47018 * 179.48092 * 20 18 17 30 30 H 1.09005 * 109.46816 * 299.47566 * 20 18 17 31 31 H 1.08992 * 109.47676 * 59.47551 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9488 1.3117 1.0206 7 6 4.1758 0.0838 -0.7685 8 7 5.3212 0.5953 -1.5353 9 6 6.1189 -0.1441 -2.3673 10 1 6.9397 0.3269 -2.8878 11 6 5.8725 -1.4990 -2.5416 12 7 4.8725 -2.0730 -1.9070 13 14 6.9602 -2.5076 -3.6770 14 1 8.3630 -2.4574 -3.1921 15 1 6.4905 -3.9162 -3.6901 16 1 6.8916 -1.9506 -5.0519 17 6 5.4668 2.0387 -1.2553 18 6 4.0558 2.5015 -0.8138 19 1 4.1145 3.3898 -0.1850 20 6 3.1559 2.7495 -2.0260 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.5111 -0.6788 -0.0656 25 1 3.4342 -0.3379 -1.4469 26 1 4.7002 -3.0198 -2.0291 27 1 5.7755 2.5692 -2.1560 28 1 6.1871 2.2000 -0.4533 29 1 2.1688 3.0645 -1.6873 30 1 3.5925 3.5303 -2.6489 31 1 3.0652 1.8308 -2.6054 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087400430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -61.307801 kcal Electronic energy + Delta-G solvation = -14985.299645 eV Core-core repulsion = 12460.776457 eV Total energy + Delta-G solvation = -2524.523188 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.24074 -37.55533 -35.94282 -32.91345 -30.05635 -29.58945 -27.05660 -25.79986 -24.38545 -21.75849 -20.11987 -18.97546 -16.99720 -16.68223 -16.29622 -15.76869 -14.96481 -14.24462 -13.66117 -13.54162 -12.79330 -12.63782 -12.17864 -11.80822 -11.71096 -11.53988 -11.10933 -10.99042 -10.76514 -10.70350 -10.34488 -10.11099 -10.08673 -9.83554 -9.72393 -9.50669 -8.59081 -6.82512 -5.69227 -3.03033 2.66611 3.22410 3.42424 3.46572 3.47838 4.51391 4.99832 5.32227 5.34862 5.38516 5.42208 5.53757 5.70483 5.71091 5.85538 6.07935 6.11779 6.15599 6.37281 6.61539 6.68076 6.70912 6.84288 6.98323 7.52489 7.55700 7.82145 8.22281 8.26033 9.22142 9.82544 10.48588 11.42585 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036078 B = 0.010386 C = 0.008662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.919327 B = 2695.404769 C = 3231.692050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.344 6.344 3 C 0.484 3.516 4 O -0.522 6.522 5 C -0.115 4.115 6 H 0.107 0.893 7 C 0.192 3.808 8 N -0.605 5.605 9 C -0.229 4.229 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.920 5.920 13 Si 0.912 3.088 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.136 3.864 18 C -0.084 4.084 19 H 0.075 0.925 20 C -0.149 4.149 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.254 0.746 27 H 0.045 0.955 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 5.251 3.543 8.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.259 6.259 3 C 0.328 3.672 4 O -0.412 6.412 5 C -0.135 4.135 6 H 0.125 0.875 7 C 0.067 3.933 8 N -0.332 5.332 9 C -0.357 4.357 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.743 3.257 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.010 3.990 18 C -0.103 4.103 19 H 0.093 0.907 20 C -0.206 4.206 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.115 0.885 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.747 5.286 3.459 8.540 hybrid contribution 0.316 -0.567 -0.510 0.825 sum -5.431 4.718 2.949 7.776 Atomic orbital electron populations 1.23177 0.77664 1.03276 1.01799 1.86678 1.22255 1.33489 1.83519 1.23733 0.91888 0.80856 0.70717 1.90548 1.67489 1.36491 1.46650 1.22586 0.86492 1.01759 1.02618 0.87501 1.21123 0.89695 0.88985 0.93542 1.44503 1.33420 1.03041 1.52242 1.19001 1.07836 0.90440 1.18426 0.90342 1.24807 0.98587 0.96708 1.00318 1.69923 1.30528 1.10938 1.45368 0.86198 0.79748 0.79366 0.80423 1.21193 1.21614 1.21225 1.21733 0.92791 0.86765 0.97720 1.22192 0.96685 0.95145 0.96288 0.90655 1.21897 0.99585 1.01908 0.97217 0.92512 0.92307 0.88450 0.93094 0.92348 0.93587 0.93641 0.95964 0.91680 0.93023 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.34 -6.39 9.68 -39.25 -0.38 -6.77 16 3 C 0.48 9.27 6.49 36.00 0.23 9.50 16 4 O -0.52 -10.23 14.14 -18.75 -0.27 -10.50 16 5 C -0.11 -2.24 3.32 -89.94 -0.30 -2.54 16 6 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 7 C 0.19 4.64 4.26 -3.06 -0.01 4.62 16 8 N -0.61 -15.37 3.39 -169.81 -0.58 -15.95 16 9 C -0.23 -6.34 10.29 -15.06 -0.15 -6.50 16 10 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 11 C -0.01 -0.22 5.49 -17.44 -0.10 -0.31 16 12 N -0.92 -26.86 10.31 55.49 0.57 -26.29 16 13 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 C 0.14 2.81 6.71 -2.35 -0.02 2.79 16 18 C -0.08 -1.54 3.31 -88.47 -0.29 -1.84 16 19 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 20 C -0.15 -2.75 8.38 37.16 0.31 -2.44 16 21 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 22 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 23 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 1.35 7.50 -51.93 -0.39 0.97 16 25 H 0.06 1.58 6.68 -51.93 -0.35 1.23 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.20 5.86 -51.93 -0.30 0.89 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.28 7.80 -51.93 -0.41 0.87 16 LS Contribution 256.22 15.07 3.86 3.86 Total: -1.00 -30.79 256.22 -5.44 -36.23 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.37 Total: -2.43 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 0.74 Total: 4.84 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.00 Total: -42.24 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.65 Total: -17.27 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.79 -5.44 -36.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087400430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.076 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds