Wall clock time and date at job start Mon Mar 30 2020 02:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00017 * 2 1 4 4 O 1.20826 * 120.00086 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00319 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.64534 * 269.07508 * 5 3 2 7 7 C 1.54330 * 110.71974 * 32.21784 * 5 3 2 8 8 N 1.47025 * 107.40401 * 140.65328 * 7 5 3 9 9 C 1.36939 * 125.64774 * 181.09901 * 8 7 5 10 10 H 1.08000 * 119.99678 * 180.02562 * 9 8 7 11 11 C 1.38804 * 119.99771 * 0.03166 * 9 8 7 12 12 N 1.31614 * 120.00423 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99829 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47081 * 59.99643 * 13 11 9 15 15 H 1.48496 * 109.47372 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46946 * 300.00053 * 13 11 9 17 17 C 1.47745 * 108.52819 * 1.18551 * 8 7 5 18 18 C 1.54916 * 104.84087 * 335.74757 * 17 8 7 19 19 H 1.08995 * 111.03215 * 155.18596 * 18 17 8 20 20 C 1.52998 * 111.00174 * 279.02336 * 18 17 8 21 21 H 1.08997 * 109.47334 * 299.99836 * 1 2 3 22 22 H 1.08996 * 109.46829 * 60.00634 * 1 2 3 23 23 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.88287 * 260.15101 * 7 5 3 25 25 H 1.09000 * 109.87773 * 21.16179 * 7 5 3 26 26 H 0.97002 * 120.00099 * 179.97438 * 12 11 9 27 27 H 1.09000 * 110.29047 * 216.94165 * 17 8 7 28 28 H 1.09000 * 110.43709 * 94.62531 * 17 8 7 29 29 H 1.09003 * 109.47018 * 179.48092 * 20 18 17 30 30 H 1.09005 * 109.46816 * 299.47566 * 20 18 17 31 31 H 1.08992 * 109.47676 * 59.47551 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9488 1.3117 1.0206 7 6 4.1758 0.0838 -0.7685 8 7 5.3212 0.5953 -1.5353 9 6 6.1189 -0.1441 -2.3673 10 1 6.9397 0.3269 -2.8878 11 6 5.8725 -1.4990 -2.5416 12 7 4.8725 -2.0730 -1.9070 13 14 6.9602 -2.5076 -3.6770 14 1 8.3630 -2.4574 -3.1921 15 1 6.4905 -3.9162 -3.6901 16 1 6.8916 -1.9506 -5.0519 17 6 5.4668 2.0387 -1.2553 18 6 4.0558 2.5015 -0.8138 19 1 4.1145 3.3898 -0.1850 20 6 3.1559 2.7495 -2.0260 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.5111 -0.6788 -0.0656 25 1 3.4342 -0.3379 -1.4469 26 1 4.7002 -3.0198 -2.0291 27 1 5.7755 2.5692 -2.1560 28 1 6.1871 2.2000 -0.4533 29 1 2.1688 3.0645 -1.6873 30 1 3.5925 3.5303 -2.6489 31 1 3.0652 1.8308 -2.6054 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087400430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:25 Heat of formation + Delta-G solvation = -80.413470 kcal Electronic energy + Delta-G solvation = -14986.128129 eV Core-core repulsion = 12460.776457 eV Total energy + Delta-G solvation = -2525.351672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.73084 -39.20360 -37.42911 -34.85242 -31.97136 -31.16423 -28.36620 -27.55028 -26.21726 -23.40055 -21.86528 -20.50676 -18.89103 -18.24641 -17.76799 -17.36680 -16.66073 -16.08353 -15.33152 -14.93923 -14.48956 -14.25695 -13.76709 -13.50645 -13.17947 -13.05656 -12.94596 -12.65219 -12.61241 -12.36815 -11.97892 -11.81130 -11.69534 -11.60262 -11.42658 -11.13689 -10.66694 -8.86252 -7.80787 -5.16250 1.17156 1.48841 1.51754 1.57934 1.87516 2.52866 3.38184 3.43490 3.72415 3.89866 4.00973 4.24587 4.32005 4.34583 4.49252 4.53582 4.65362 4.69236 4.89607 5.05890 5.12401 5.17536 5.36494 5.48053 5.50128 5.56537 5.77255 6.22001 6.77044 7.12377 7.79251 8.44433 9.29621 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036078 B = 0.010386 C = 0.008662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.919327 B = 2695.404769 C = 3231.692050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.486 3.514 4 O -0.527 6.527 5 C -0.109 4.109 6 H 0.131 0.869 7 C 0.207 3.793 8 N -0.627 5.627 9 C -0.242 4.242 10 H 0.086 0.914 11 C -0.065 4.065 12 N -0.949 5.949 13 Si 0.977 3.023 14 H -0.276 1.276 15 H -0.296 1.296 16 H -0.279 1.279 17 C 0.131 3.869 18 C -0.075 4.075 19 H 0.112 0.888 20 C -0.141 4.141 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.123 0.877 24 H 0.016 0.984 25 H 0.021 0.979 26 H 0.247 0.753 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 6.522 3.744 9.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.331 3.669 4 O -0.417 6.417 5 C -0.129 4.129 6 H 0.148 0.852 7 C 0.082 3.918 8 N -0.353 5.353 9 C -0.371 4.371 10 H 0.103 0.897 11 C -0.258 4.258 12 N -0.598 5.598 13 Si 0.806 3.194 14 H -0.202 1.202 15 H -0.222 1.222 16 H -0.205 1.205 17 C 0.007 3.993 18 C -0.094 4.094 19 H 0.130 0.870 20 C -0.198 4.198 21 H 0.091 0.909 22 H 0.078 0.922 23 H 0.141 0.859 24 H 0.034 0.966 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.584 6.591 3.664 9.383 hybrid contribution 0.230 -0.943 -0.566 1.124 sum -5.354 5.648 3.098 8.376 Atomic orbital electron populations 1.23525 0.75062 1.05355 1.02611 1.86650 1.24969 1.33317 1.83231 1.23519 0.91684 0.81020 0.70670 1.90537 1.67520 1.36524 1.47121 1.22521 0.86995 1.00019 1.03344 0.85159 1.20686 0.88657 0.90247 0.92239 1.44791 1.33353 1.05172 1.52030 1.19417 1.08118 0.91029 1.18488 0.89668 1.25633 1.00116 0.97942 1.02153 1.70153 1.32156 1.10591 1.46864 0.85174 0.78268 0.77290 0.78714 1.20241 1.22206 1.20492 1.21948 0.94619 0.84190 0.98558 1.22227 0.94906 0.95772 0.96471 0.86988 1.21818 1.00016 1.00801 0.97175 0.90928 0.92220 0.85917 0.96564 0.96092 0.94368 0.92946 0.94331 0.91458 0.90911 0.95537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.37 -13.50 9.68 -51.39 -0.50 -14.00 16 3 C 0.49 18.15 6.49 71.23 0.46 18.61 16 4 O -0.53 -19.64 14.14 21.96 0.31 -19.33 16 5 C -0.11 -4.14 3.32 -10.35 -0.03 -4.17 16 6 H 0.13 4.30 8.14 -2.39 -0.02 4.28 16 7 C 0.21 10.23 4.26 86.73 0.37 10.60 16 8 N -0.63 -31.86 3.39 -691.14 -2.34 -34.20 16 9 C -0.24 -13.44 10.29 84.03 0.86 -12.57 16 10 H 0.09 4.49 7.83 -2.91 -0.02 4.46 16 11 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 12 N -0.95 -57.04 10.31 21.65 0.22 -56.82 16 13 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 C 0.13 5.18 6.71 86.80 0.58 5.76 16 18 C -0.07 -2.57 3.31 -9.40 -0.03 -2.60 16 19 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 20 C -0.14 -4.95 8.38 71.98 0.60 -4.35 16 21 H 0.07 1.67 8.13 -2.39 -0.02 1.65 16 22 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 23 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.02 0.90 7.50 -2.39 -0.02 0.88 16 25 H 0.02 1.18 6.68 -2.39 -0.02 1.16 16 26 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.05 1.99 8.05 -2.39 -0.02 1.97 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 2.34 5.86 -2.39 -0.01 2.32 16 30 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.03 1.09 7.80 -2.39 -0.02 1.07 16 Total: -1.00 -66.56 256.22 5.30 -61.26 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 1.11 Total: 5.45 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.48 Total: 9.96 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -2.12 Total: -91.02 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.19 Total: -33.33 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -66.56 5.30 -61.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087400430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.156 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds