Wall clock time and date at job start Mon Mar 30 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34641 * 116.99363 * 2 1 4 4 O 1.21511 * 120.00465 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99514 * 180.02562 * 3 2 1 6 6 C 1.47424 * 125.65133 * 359.97086 * 5 3 2 7 7 C 1.54907 * 104.83546 * 204.16638 * 6 5 3 8 8 C 1.55156 * 101.58122 * 322.99615 * 7 6 5 9 9 H 1.09004 * 110.71393 * 276.95654 * 8 7 6 10 10 C 1.50704 * 110.72152 * 153.86343 * 8 7 6 11 11 H 1.07991 * 119.99997 * 275.18596 * 10 8 7 12 12 C 1.37879 * 119.99871 * 95.46683 * 10 8 7 13 13 N 1.31517 * 120.00024 * 184.26692 * 12 10 8 14 14 Si 1.86802 * 120.00031 * 4.26105 * 12 10 8 15 15 H 1.48492 * 109.47320 * 84.85497 * 14 12 10 16 16 H 1.48510 * 109.46993 * 204.85686 * 14 12 10 17 17 H 1.48506 * 109.47163 * 324.85502 * 14 12 10 18 18 C 1.47024 * 125.64583 * 180.02562 * 5 3 2 19 19 H 1.08996 * 109.88831 * 59.48156 * 18 5 3 20 20 C 1.52997 * 109.87812 * 298.31409 * 18 5 3 21 21 H 1.09009 * 109.46930 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47140 * 299.99282 * 1 2 3 23 23 H 1.08996 * 109.47251 * 60.00406 * 1 2 3 24 24 H 1.09000 * 110.36161 * 85.33121 * 6 5 3 25 25 H 1.09001 * 110.36538 * 323.00650 * 6 5 3 26 26 H 1.08996 * 111.00605 * 204.91872 * 7 6 5 27 27 H 1.08999 * 111.00167 * 81.06442 * 7 6 5 28 28 H 0.96996 * 120.00016 * 180.02562 * 13 12 10 29 29 H 1.09001 * 109.47683 * 302.19394 * 20 18 5 30 30 H 1.08998 * 109.47231 * 62.19798 * 20 18 5 31 31 H 1.09012 * 109.47122 * 182.19295 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4013 2.2188 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.3299 0.1190 -0.0005 7 6 5.6448 0.6628 0.6119 8 6 5.6899 2.0993 0.0273 9 1 6.1097 2.0931 -0.9787 10 6 6.4785 3.0163 0.9263 11 1 5.9968 3.4943 1.7664 12 6 7.8136 3.2496 0.6729 13 7 8.5225 3.9820 1.5040 14 14 8.6156 2.5252 -0.8508 15 1 8.3819 3.4251 -2.0085 16 1 10.0759 2.3827 -0.6213 17 1 8.0265 1.1916 -1.1337 18 6 4.2022 2.5083 -0.0001 19 1 3.9643 3.1007 0.8834 20 6 3.9076 3.3153 -1.2661 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 4.5014 -0.2294 -1.0190 25 1 3.9297 -0.6868 0.6148 26 1 6.5021 0.0781 0.2785 27 1 5.5887 0.6855 1.7002 28 1 9.4616 4.1464 1.3255 29 1 4.1300 2.7084 -2.1438 30 1 2.8557 3.6006 -1.2786 31 1 4.5274 4.2120 -1.2778 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107229154.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:47 Heat of formation + Delta-G solvation = -83.114480 kcal Electronic energy + Delta-G solvation = -14749.452884 eV Core-core repulsion = 12223.984087 eV Total energy + Delta-G solvation = -2525.468797 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.16753 -38.00345 -35.77400 -33.01916 -31.13117 -30.59030 -27.56746 -26.37000 -23.52972 -22.39374 -20.36349 -19.13270 -17.66040 -17.09049 -16.38446 -16.21566 -14.74758 -14.41215 -13.91042 -13.32448 -13.02706 -12.84699 -12.72017 -12.15061 -11.99922 -11.79338 -11.55260 -11.03398 -10.91440 -10.67788 -10.54115 -10.23350 -10.04562 -9.81308 -9.65466 -9.22093 -8.62007 -8.22645 -6.17073 -4.17579 2.51338 3.20269 3.22864 3.31316 3.31990 4.33086 4.37200 5.07465 5.21959 5.28517 5.36657 5.51464 5.66744 5.73197 5.87415 5.96906 6.14040 6.17883 6.40094 6.50583 6.62369 6.74667 6.82676 6.85223 7.01531 7.22825 7.61665 7.98768 8.41297 8.67231 8.87515 9.43989 10.95462 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054371 B = 0.008496 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.853543 B = 3295.023816 C = 3424.290514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.376 6.376 3 C 0.657 3.343 4 O -0.579 6.579 5 N -0.593 5.593 6 C 0.100 3.900 7 C -0.135 4.135 8 C 0.017 3.983 9 H 0.047 0.953 10 C -0.510 4.510 11 H 0.077 0.923 12 C 0.075 3.925 13 N -0.894 5.894 14 Si 0.876 3.124 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.264 1.264 18 C 0.157 3.843 19 H 0.079 0.921 20 C -0.157 4.157 21 H 0.097 0.903 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.266 0.734 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 -8.651 -4.623 13.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.290 6.290 3 C 0.411 3.589 4 O -0.469 6.469 5 N -0.333 5.333 6 C -0.022 4.022 7 C -0.173 4.173 8 C -0.003 4.003 9 H 0.065 0.935 10 C -0.547 4.547 11 H 0.095 0.905 12 C -0.128 4.128 13 N -0.531 5.531 14 Si 0.704 3.296 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.189 1.189 18 C 0.057 3.943 19 H 0.097 0.903 20 C -0.215 4.215 21 H 0.115 0.885 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.567 -8.281 -4.580 13.457 hybrid contribution 0.362 -0.350 -0.784 0.931 sum -9.205 -8.631 -5.363 13.711 Atomic orbital electron populations 1.23079 0.75377 1.02809 1.02428 1.86248 1.23403 1.31809 1.87536 1.17676 0.82428 0.81802 0.76988 1.90943 1.64094 1.34833 1.57074 1.47588 1.01007 1.10642 1.74103 1.22414 0.91070 0.88313 1.00427 1.23174 0.93866 0.99056 1.01233 1.20246 0.89940 0.92813 0.97312 0.93523 1.20848 0.94328 1.26983 1.12570 0.90463 1.25030 0.97066 0.94387 0.96299 1.69892 1.08342 1.38551 1.36305 0.86878 0.78511 0.80376 0.83882 1.20025 1.21437 1.18889 1.21969 0.91319 0.82710 0.98350 0.90306 1.22098 1.01925 1.00550 0.96961 0.88497 0.92139 0.92229 0.92217 0.91355 0.91202 0.90631 0.92425 0.93537 0.92365 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 10.56 101.05 1.07 1.74 16 2 O -0.38 -6.04 10.10 -40.33 -0.41 -6.45 16 3 C 0.66 12.62 8.41 54.06 0.45 13.07 16 4 O -0.58 -12.39 15.18 -19.28 -0.29 -12.68 16 5 N -0.59 -11.46 3.06 -168.76 -0.52 -11.98 16 6 C 0.10 1.71 6.92 -2.53 -0.02 1.69 16 7 C -0.13 -2.60 6.52 -24.58 -0.16 -2.76 16 8 C 0.02 0.37 1.96 -89.94 -0.18 0.19 16 9 H 0.05 1.03 5.30 -51.93 -0.28 0.76 16 10 C -0.51 -13.48 8.88 -34.44 -0.31 -13.79 16 11 H 0.08 2.25 7.87 -52.49 -0.41 1.84 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 13 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 14 Si 0.88 20.33 26.98 -169.99 -4.59 15.74 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.26 -5.74 6.73 56.52 0.38 -5.36 16 18 C 0.16 3.29 3.05 -66.95 -0.20 3.09 16 19 H 0.08 1.80 7.69 -51.93 -0.40 1.40 16 20 C -0.16 -3.05 9.10 37.16 0.34 -2.71 16 21 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 26 H 0.07 1.28 7.98 -51.93 -0.41 0.87 16 27 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.13 6.90 -51.93 -0.36 0.78 16 31 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 LS Contribution 260.07 15.07 3.92 3.92 Total: -1.00 -30.27 260.07 -4.60 -34.86 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.39 Total: -0.47 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 0.90 Total: 2.47 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.26 Total: -37.39 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.70 Total: -19.13 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.59 Total: 15.74 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.27 -4.60 -34.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107229154.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.250 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds