Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.32784 * 2 1 4 4 O 1.44428 * 110.37325 * 237.75296 * 2 1 3 5 5 C 1.44429 * 105.27260 * 200.65704 * 4 2 1 6 6 C 1.54481 * 104.80153 * 40.50726 * 5 4 2 7 7 C 1.54473 * 110.37291 * 122.36802 * 2 1 3 8 8 H 1.09000 * 110.51315 * 24.16753 * 7 2 1 9 9 N 1.46502 * 110.51477 * 261.45658 * 7 2 1 10 10 C 1.46495 * 119.99641 * 300.00592 * 9 7 2 11 11 C 1.34781 * 119.99916 * 119.99586 * 9 7 2 12 12 O 1.21686 * 120.00221 * 0.02562 * 11 9 7 13 13 C 1.46377 * 119.99536 * 180.02562 * 11 9 7 14 14 H 1.07997 * 120.00153 * 0.02562 * 13 11 9 15 15 C 1.40046 * 119.99566 * 180.02562 * 13 11 9 16 16 N 1.30673 * 120.00419 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99876 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47089 * 60.00193 * 17 15 13 19 19 H 1.48496 * 109.47154 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47068 * 300.00199 * 17 15 13 21 21 H 1.09001 * 109.47002 * 180.79395 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.79832 * 1 2 3 23 23 H 1.09000 * 109.47050 * 60.79661 * 1 2 3 24 24 H 1.09002 * 110.37119 * 159.34301 * 5 4 2 25 25 H 1.08996 * 110.36763 * 281.56502 * 5 4 2 26 26 H 1.09000 * 110.50929 * 94.67063 * 6 5 4 27 27 H 1.08998 * 110.50996 * 217.23520 * 6 5 4 28 28 H 1.08999 * 109.47885 * 89.99830 * 10 9 7 29 29 H 1.09005 * 109.46688 * 209.99592 * 10 9 7 30 30 H 1.09002 * 109.47699 * 329.99095 * 10 9 7 31 31 H 0.96998 * 120.00368 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 8 2.0329 -0.7224 -1.1451 5 6 3.3875 -1.0862 -0.8006 6 6 3.3178 -1.5063 0.6844 7 6 2.0678 -0.7753 1.2231 8 1 1.3277 -1.4936 1.5757 9 7 2.4377 0.1511 2.2961 10 6 3.4652 1.1690 2.0632 11 6 1.8324 0.0670 3.4974 12 8 0.9791 -0.7787 3.6910 13 6 2.2016 0.9930 4.5693 14 1 2.9586 1.7438 4.3974 15 6 1.5731 0.9053 5.8177 16 7 0.6567 -0.0028 6.0256 17 14 2.0446 2.0865 7.1858 18 1 1.7809 3.4810 6.7486 19 1 1.2396 1.7875 8.3973 20 1 3.4878 1.9305 7.4989 21 1 -0.3633 -1.0276 0.0142 22 1 -0.3633 0.5262 0.8827 23 1 -0.3633 0.5014 -0.8970 24 1 3.7243 -1.9207 -1.4157 25 1 4.0529 -0.2318 -0.9242 26 1 3.1956 -2.5860 0.7705 27 1 4.2120 -1.1806 1.2157 28 1 2.9970 2.0787 1.6872 29 1 3.9806 1.3857 2.9989 30 1 4.1827 0.8000 1.3302 31 1 0.2217 -0.0638 6.8904 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134693755.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = -82.079447 kcal Electronic energy + Delta-G solvation = -14880.507790 eV Core-core repulsion = 12355.083876 eV Total energy + Delta-G solvation = -2525.423914 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.51796 -37.09967 -33.93153 -32.48834 -31.19393 -30.57775 -26.63334 -25.91970 -24.51520 -21.75935 -20.77680 -18.90884 -16.68071 -16.04022 -15.56130 -15.30468 -15.12216 -14.18504 -13.70669 -13.42473 -13.16231 -12.37084 -12.10954 -11.86520 -11.60280 -11.54493 -11.38930 -11.08682 -10.99492 -10.82788 -10.61086 -10.34870 -10.23585 -10.19306 -9.47175 -8.88179 -7.63428 -7.26081 -6.23133 -4.69204 3.12731 3.18052 3.19530 4.00121 4.17709 4.49468 4.62056 5.03221 5.17088 5.31323 5.47880 5.56788 5.73246 5.79467 5.86436 5.92641 6.05019 6.11814 6.26957 6.32936 6.45600 6.51278 6.53849 6.66622 7.11559 7.40696 7.57941 8.09285 8.30639 8.97986 9.36554 10.53002 10.71542 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051517 B = 0.008574 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.383612 B = 3264.919720 C = 3437.818494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.059 3.941 3 H 0.068 0.932 4 O -0.379 6.379 5 C 0.048 3.952 6 C -0.169 4.169 7 C 0.125 3.875 8 H 0.106 0.894 9 N -0.637 5.637 10 C 0.098 3.902 11 C 0.556 3.444 12 O -0.576 6.576 13 C -0.543 4.543 14 H 0.072 0.928 15 C 0.087 3.913 16 N -0.766 5.766 17 Si 0.907 3.093 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.268 1.268 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 1.551 -8.346 9.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.001 3.999 3 H 0.086 0.914 4 O -0.298 6.298 5 C -0.029 4.029 6 C -0.208 4.208 7 C 0.019 3.981 8 H 0.124 0.876 9 N -0.376 5.376 10 C -0.046 4.046 11 C 0.363 3.637 12 O -0.458 6.458 13 C -0.579 4.579 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.732 3.268 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.193 1.193 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.405 0.951 -8.289 9.435 hybrid contribution 0.532 0.724 0.805 1.207 sum 4.937 1.675 -7.484 9.121 Atomic orbital electron populations 1.21705 0.93105 1.02740 1.01992 1.23433 0.95619 0.95661 0.85223 0.91437 1.89079 1.26990 1.74993 1.38728 1.23311 0.84937 0.99236 0.95428 1.23313 1.00295 1.01419 0.95816 1.21996 0.95865 0.92520 0.87749 0.87588 1.47958 1.42411 1.34619 1.12571 1.21397 0.91054 0.90980 1.01181 1.18287 0.80733 0.84740 0.79986 1.90592 1.34976 1.39592 1.80690 1.20962 1.23650 1.17559 0.95752 0.90973 1.25742 0.93529 0.94920 0.99110 1.70006 1.18529 1.28172 1.22754 0.86441 0.79238 0.81069 0.80076 1.19248 1.20522 1.19267 0.92030 0.90693 0.92705 0.89685 0.92803 0.90770 0.90105 0.95009 0.90769 0.93973 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.52 37.16 0.35 -2.02 16 2 C 0.06 1.06 3.53 -25.95 -0.09 0.96 16 3 H 0.07 1.19 7.04 -51.93 -0.37 0.82 16 4 O -0.38 -6.44 11.34 -35.23 -0.40 -6.84 16 5 C 0.05 0.68 7.63 37.93 0.29 0.97 16 6 C -0.17 -2.75 6.24 -25.17 -0.16 -2.91 16 7 C 0.13 2.50 3.07 -66.37 -0.20 2.30 16 8 H 0.11 2.44 6.70 -51.93 -0.35 2.09 16 9 N -0.64 -14.31 2.83 -173.81 -0.49 -14.80 16 10 C 0.10 1.79 8.91 59.84 0.53 2.33 16 11 C 0.56 15.62 7.61 -12.98 -0.10 15.52 16 12 O -0.58 -18.36 14.39 5.20 0.07 -18.28 16 13 C -0.54 -15.00 8.74 -35.63 -0.31 -15.31 16 14 H 0.07 1.81 6.00 -52.49 -0.31 1.50 16 15 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 16 N -0.77 -22.68 11.83 55.55 0.66 -22.02 16 17 Si 0.91 19.83 29.56 -169.99 -5.02 14.81 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 21 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 22 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.08 1.28 6.75 -51.93 -0.35 0.93 16 28 H 0.03 0.55 7.92 -51.93 -0.41 0.14 16 29 H 0.07 1.39 6.09 -51.93 -0.32 1.07 16 30 H 0.04 0.64 6.57 -51.93 -0.34 0.30 16 31 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 LS Contribution 256.23 15.07 3.86 3.86 Total: -1.00 -32.74 256.23 -5.22 -37.96 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.12 Total: 1.19 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 0.22 Total: 4.13 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.17 Total: -36.82 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.32 Total: -25.12 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.74 -5.22 -37.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134693755.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.118 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds