Wall clock time and date at job start Mon Mar 30 2020 02:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 C 1.46097 * 118.72693 * 239.73175 * 4 2 1 6 6 C 1.53212 * 109.82101 * 161.46698 * 5 4 2 7 7 H 1.09002 * 109.82739 * 289.74659 * 6 5 4 8 8 C 1.50700 * 109.66653 * 169.24195 * 6 5 4 9 9 H 1.08001 * 120.00232 * 0.97261 * 8 6 5 10 10 C 1.37885 * 119.99863 * 180.96866 * 8 6 5 11 11 N 1.31513 * 119.99548 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 119.99873 * 179.97438 * 10 8 6 13 13 H 1.48509 * 109.47128 * 60.00536 * 12 10 8 14 14 H 1.48499 * 109.47118 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47591 * 300.00130 * 12 10 8 16 16 O 1.43239 * 108.51696 * 49.54395 * 6 5 4 17 17 C 1.42977 * 112.98438 * 291.45861 * 16 6 5 18 18 C 1.33865 * 118.73174 * 59.99975 * 4 2 1 19 19 O 1.21277 * 118.83779 * 1.88551 * 18 4 2 20 20 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 24 24 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 25 25 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 27 27 H 1.08999 * 109.39573 * 281.77991 * 5 4 2 28 28 H 1.09002 * 109.39319 * 41.50762 * 5 4 2 29 29 H 0.97000 * 119.99283 * 180.02562 * 11 10 8 30 30 H 1.09004 * 109.40957 * 289.49112 * 17 16 6 31 31 H 1.09000 * 109.41498 * 169.70038 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.8611 -1.8722 -1.0300 6 6 2.8751 -2.6870 -2.3274 7 1 1.9024 -3.1545 -2.4809 8 6 3.9400 -3.7503 -2.2472 9 1 4.5382 -3.8491 -1.3534 10 6 4.1505 -4.5972 -3.3148 11 7 3.4216 -4.4772 -4.4028 12 14 5.4710 -5.9147 -3.2155 13 1 5.1728 -6.8302 -2.0849 14 1 5.4968 -6.6862 -4.4841 15 1 6.7934 -5.2749 -2.9989 16 8 3.1605 -1.8024 -3.4172 17 6 2.1009 -0.8788 -3.6788 18 6 1.6794 -0.2112 -2.3993 19 8 1.0089 0.7976 -2.4594 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9562 0.8901 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 3.8762 -1.5610 -0.7831 28 1 2.4659 -2.4879 -0.2221 29 1 3.5696 -5.0732 -5.1537 30 1 1.2519 -1.4129 -4.1056 31 1 2.4448 -0.1234 -4.3854 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219014703.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:42 Heat of formation + Delta-G solvation = -99.190511 kcal Electronic energy + Delta-G solvation = -14970.190872 eV Core-core repulsion = 12444.024967 eV Total energy + Delta-G solvation = -2526.165906 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.64810 -38.50558 -36.99098 -34.74205 -33.31422 -31.05259 -28.09810 -27.93554 -26.73512 -24.32843 -22.25450 -19.69010 -19.11299 -17.85445 -17.39342 -16.72067 -16.51478 -16.08838 -15.42852 -15.24064 -14.77174 -14.35360 -14.24368 -13.83198 -13.25990 -13.08369 -12.93345 -12.74585 -12.65245 -12.51023 -12.19225 -12.09535 -11.82670 -11.20881 -11.03276 -10.59366 -9.90351 -9.64627 -8.19698 -6.40937 1.47008 1.48949 1.51444 1.56916 1.99154 2.41951 2.98993 3.50940 3.64913 4.03131 4.13897 4.14443 4.33145 4.39863 4.48666 4.54677 4.67334 4.76338 4.76897 4.88389 4.95357 5.21444 5.26302 5.36645 5.67650 5.69577 5.93083 6.37925 6.59189 6.83350 7.12645 7.35588 8.89179 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053329 B = 0.008734 C = 0.008044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.912553 B = 3205.004593 C = 3480.021439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 C -0.161 4.161 4 N -0.598 5.598 5 C 0.100 3.900 6 C 0.201 3.799 7 H -0.003 1.003 8 C -0.550 4.550 9 H 0.081 0.919 10 C 0.026 3.974 11 N -0.897 5.897 12 Si 0.968 3.032 13 H -0.261 1.261 14 H -0.286 1.286 15 H -0.269 1.269 16 O -0.379 6.379 17 C 0.041 3.959 18 C 0.490 3.510 19 O -0.574 6.574 20 H 0.049 0.951 21 H 0.089 0.911 22 H 0.052 0.948 23 H 0.108 0.892 24 H 0.087 0.913 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.265 0.735 30 H 0.069 0.931 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 5.077 8.363 9.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 C -0.219 4.219 4 N -0.330 5.330 5 C -0.022 4.022 6 C 0.145 3.855 7 H 0.015 0.985 8 C -0.587 4.587 9 H 0.099 0.901 10 C -0.177 4.177 11 N -0.534 5.534 12 Si 0.792 3.208 13 H -0.186 1.186 14 H -0.212 1.212 15 H -0.194 1.194 16 O -0.298 6.298 17 C -0.039 4.039 18 C 0.279 3.721 19 O -0.456 6.456 20 H 0.068 0.932 21 H 0.108 0.892 22 H 0.071 0.929 23 H 0.126 0.874 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.232 5.497 8.076 10.021 hybrid contribution 0.280 -0.722 -0.371 0.858 sum -1.951 4.776 7.705 9.273 Atomic orbital electron populations 1.22121 0.94558 1.01850 1.03350 1.21387 0.95133 0.93964 0.87050 1.22130 1.00597 0.95739 1.03396 1.47899 1.49964 1.29098 1.06075 1.22312 0.94187 0.85352 1.00352 1.20052 0.96339 0.87102 0.81977 0.98504 1.21253 1.21399 1.13559 1.02479 0.90142 1.25957 0.97891 0.99269 0.94619 1.70143 1.39973 1.38091 1.05150 0.85469 0.79142 0.78467 0.77692 1.18573 1.21152 1.19424 1.88506 1.39007 1.47097 1.55159 1.22628 0.93634 0.93674 0.93958 1.21210 0.79496 0.84460 0.86972 1.90540 1.41135 1.25980 1.87963 0.93197 0.89198 0.92941 0.87401 0.89375 0.93215 0.92679 0.91295 0.88915 0.92643 0.91283 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.09 71.98 0.65 -3.76 16 2 C 0.13 3.66 3.24 44.99 0.15 3.80 16 3 C -0.16 -4.40 9.09 71.98 0.65 -3.75 16 4 N -0.60 -21.95 2.80 -800.24 -2.24 -24.19 16 5 C 0.10 3.86 5.82 86.53 0.50 4.37 16 6 C 0.20 9.86 2.54 29.92 0.08 9.94 16 7 H 0.00 -0.14 8.10 -2.39 -0.02 -0.16 16 8 C -0.55 -28.68 8.79 25.60 0.22 -28.46 16 9 H 0.08 3.90 7.75 -2.91 -0.02 3.88 16 10 C 0.03 1.39 5.40 84.66 0.46 1.85 16 11 N -0.90 -51.34 12.84 21.45 0.28 -51.06 16 12 Si 0.97 41.31 29.54 68.60 2.03 43.34 16 13 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 14 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 16 O -0.38 -19.34 9.90 -148.98 -1.47 -20.82 16 17 C 0.04 1.77 6.98 71.13 0.50 2.27 16 18 C 0.49 20.04 7.01 87.69 0.61 20.65 16 19 O -0.57 -24.27 12.77 -3.02 -0.04 -24.31 16 20 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.05 1.73 6.08 -2.39 -0.01 1.72 16 23 H 0.11 2.56 7.85 -2.39 -0.02 2.54 16 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.82 5.94 -2.39 -0.01 1.81 16 27 H 0.07 2.61 8.11 -2.39 -0.02 2.59 16 28 H 0.09 3.13 8.09 -2.39 -0.02 3.11 16 29 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.12 4.71 8.14 -2.39 -0.02 4.69 16 Total: -1.00 -62.27 256.22 3.48 -58.79 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.11 Total: 11.34 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 3.83 Total: 6.91 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -1.96 Total: -75.25 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.51 Total: -45.13 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -62.27 3.48 -58.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219014703.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.402 kcal (2) G-P(sol) polarization free energy of solvation -62.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds