Wall clock time and date at job start Mon Mar 30 2020 02:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.86914 * 2 1 4 4 O 1.43739 * 109.88223 * 121.01315 * 2 1 3 5 5 C 1.44376 * 106.97681 * 145.93702 * 4 2 1 6 6 C 1.55002 * 103.48924 * 319.93902 * 5 4 2 7 7 C 1.54105 * 109.87583 * 238.84516 * 2 1 3 8 8 H 1.09002 * 110.48393 * 119.86804 * 7 2 1 9 9 C 1.53001 * 110.48893 * 357.22358 * 7 2 1 10 10 N 1.46496 * 109.46975 * 178.78084 * 9 7 2 11 11 C 1.34774 * 119.99712 * 179.97438 * 10 9 7 12 12 O 1.21684 * 120.00370 * 359.97438 * 11 10 9 13 13 C 1.46382 * 120.00078 * 180.02562 * 11 10 9 14 14 H 1.08002 * 119.99430 * 353.93851 * 13 11 10 15 15 C 1.40044 * 120.00302 * 173.94055 * 13 11 10 16 16 N 1.30667 * 120.00062 * 6.14813 * 15 13 11 17 17 Si 1.86802 * 120.00136 * 186.15039 * 15 13 11 18 18 H 1.48498 * 109.47071 * 94.98336 * 17 15 13 19 19 H 1.48500 * 109.47069 * 214.98242 * 17 15 13 20 20 H 1.48503 * 109.46821 * 334.98098 * 17 15 13 21 21 H 1.09000 * 109.46610 * 300.44147 * 1 2 3 22 22 H 1.09001 * 109.47333 * 60.43930 * 1 2 3 23 23 H 1.08990 * 109.47162 * 180.44129 * 1 2 3 24 24 H 1.08999 * 110.62171 * 201.43964 * 5 4 2 25 25 H 1.08996 * 110.62039 * 78.43847 * 5 4 2 26 26 H 1.08999 * 110.90462 * 155.22162 * 6 5 4 27 27 H 1.08996 * 110.90613 * 278.82639 * 6 5 4 28 28 H 1.09002 * 109.46858 * 298.77975 * 9 7 2 29 29 H 1.08998 * 109.47463 * 58.77784 * 9 7 2 30 30 H 0.97003 * 120.00472 * 359.97438 * 10 9 7 31 31 H 0.97003 * 120.00284 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6965 1.1585 5 6 3.2380 -1.3631 0.7663 6 6 2.9195 -1.8922 -0.6553 7 6 2.0539 -0.7498 -1.2402 8 1 2.6618 -0.0882 -1.8574 9 6 0.8897 -1.3215 -2.0518 10 7 1.4107 -2.0035 -3.2391 11 6 0.5616 -2.5882 -4.1072 12 8 -0.6377 -2.5500 -3.9046 13 6 1.0820 -3.2702 -5.2933 14 1 2.1357 -3.2216 -5.5252 15 6 0.2137 -3.9855 -6.1273 16 7 -1.0752 -3.9458 -5.9164 17 14 0.8981 -4.9964 -7.5412 18 1 1.0702 -6.4053 -7.1045 19 1 -0.0442 -4.9452 -8.6878 20 1 2.2122 -4.4423 -7.9552 21 1 -0.3632 0.5207 0.8860 22 1 -0.3634 0.5070 -0.8939 23 1 -0.3633 -1.0275 0.0079 24 1 3.4586 -2.1889 1.4427 25 1 4.0685 -0.6579 0.7363 26 1 3.8331 -2.0239 -1.2350 27 1 2.3539 -2.8227 -0.6064 28 1 0.3341 -2.0317 -1.4394 29 1 0.2284 -0.5114 -2.3590 30 1 2.3667 -2.0343 -3.4005 31 1 -1.6767 -4.4415 -6.4939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235597042.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:57 Heat of formation + Delta-G solvation = -121.899438 kcal Electronic energy + Delta-G solvation = -14375.769699 eV Core-core repulsion = 11848.619060 eV Total energy + Delta-G solvation = -2527.150639 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.88707 -39.17930 -35.85888 -34.58032 -33.05808 -32.27767 -28.94567 -27.21797 -25.60614 -23.10361 -21.82797 -20.80740 -19.08303 -17.75202 -17.39141 -16.72493 -16.26898 -15.97561 -15.79946 -15.57915 -14.44405 -14.31253 -13.86379 -13.43445 -13.26530 -13.14994 -12.93340 -12.80607 -12.61479 -12.17127 -12.01088 -11.88160 -11.77369 -11.55172 -10.93874 -10.61526 -9.87322 -9.46962 -8.30542 -6.85841 1.40262 1.41537 1.57645 2.24550 2.46898 2.90450 3.08701 3.57831 3.63637 3.67680 3.99306 4.13948 4.30189 4.40115 4.42895 4.62136 4.66951 4.77541 4.86161 4.91904 5.06427 5.09646 5.19544 5.29836 5.31935 5.87202 5.98793 6.24019 6.27087 6.86348 7.55629 8.48885 8.66946 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058327 B = 0.006710 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.939478 B = 4171.686707 C = 4507.563960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.084 3.916 3 H 0.093 0.907 4 O -0.398 6.398 5 C 0.048 3.952 6 C -0.149 4.149 7 C -0.122 4.122 8 H 0.106 0.894 9 C 0.147 3.853 10 N -0.753 5.753 11 C 0.536 3.464 12 O -0.635 6.635 13 C -0.575 4.575 14 H 0.089 0.911 15 C 0.027 3.973 16 N -0.824 5.824 17 Si 0.999 3.001 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.246 1.246 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.028 0.972 29 H 0.039 0.961 30 H 0.395 0.605 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.888 5.130 8.169 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.110 0.890 4 O -0.318 6.318 5 C -0.028 4.028 6 C -0.186 4.186 7 C -0.141 4.141 8 H 0.124 0.876 9 C 0.022 3.978 10 N -0.408 5.408 11 C 0.340 3.660 12 O -0.523 6.523 13 C -0.612 4.612 14 H 0.107 0.893 15 C -0.188 4.188 16 N -0.453 5.453 17 Si 0.819 3.181 18 H -0.188 1.188 19 H -0.198 1.198 20 H -0.169 1.169 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.063 0.937 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.229 0.771 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.744 5.135 8.509 13.918 hybrid contribution 0.164 -0.516 -0.815 0.979 sum 9.908 4.619 7.694 13.368 Atomic orbital electron populations 1.22031 0.94513 1.02155 1.02773 1.22730 0.94876 0.96084 0.83705 0.88975 1.88845 1.41016 1.68249 1.33673 1.23698 0.87309 0.96974 0.94807 1.23207 1.00566 0.97644 0.97208 1.22768 0.96301 0.98101 0.96901 0.87624 1.21098 0.95515 0.94773 0.86395 1.45808 1.09533 1.60466 1.24981 1.18645 0.85224 0.78299 0.83830 1.90549 1.17877 1.65195 1.78649 1.21454 0.96463 1.34365 1.08875 0.89273 1.27009 0.94366 0.96442 1.00935 1.70197 1.04988 1.34128 1.36027 0.84987 0.79226 0.78058 0.75877 1.18833 1.19784 1.16946 0.90958 0.90907 0.93656 0.87934 0.89865 0.88072 0.92445 0.95406 0.94270 0.77117 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 8.40 71.98 0.60 -3.77 16 2 C 0.08 2.14 4.05 30.97 0.13 2.27 16 3 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 4 O -0.40 -10.76 11.19 -148.98 -1.67 -12.43 16 5 C 0.05 0.99 7.72 72.67 0.56 1.56 16 6 C -0.15 -3.61 6.39 31.90 0.20 -3.40 16 7 C -0.12 -3.32 3.11 -9.80 -0.03 -3.35 16 8 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 9 C 0.15 5.72 3.79 86.38 0.33 6.05 16 10 N -0.75 -33.84 5.39 -467.41 -2.52 -36.36 16 11 C 0.54 31.52 7.74 86.36 0.67 32.18 16 12 O -0.64 -43.47 15.04 -4.30 -0.06 -43.54 16 13 C -0.57 -32.75 9.53 24.83 0.24 -32.51 16 14 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 15 C 0.03 1.54 5.49 85.30 0.47 2.01 16 16 N -0.82 -51.10 11.85 21.83 0.26 -50.84 16 17 Si 1.00 40.94 29.56 68.60 2.03 42.97 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 20 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.07 2.02 6.85 -2.39 -0.02 2.01 16 23 H 0.04 1.46 6.70 -2.39 -0.02 1.45 16 24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 1.69 7.83 -2.39 -0.02 1.67 16 28 H 0.03 1.23 6.84 -2.39 -0.02 1.21 16 29 H 0.04 1.63 6.67 -2.39 -0.02 1.62 16 30 H 0.40 14.97 8.30 -92.71 -0.77 14.20 16 31 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 Total: -1.00 -76.57 258.77 1.56 -75.00 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.36 Total: 24.15 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 3.17 Total: 1.03 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -2.26 Total: -87.19 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -1.73 Total: -55.96 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -76.57 1.56 -75.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235597042.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.895 kcal (2) G-P(sol) polarization free energy of solvation -76.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds