Wall clock time and date at job start Mon Mar 30 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46947 * 2 1 4 4 O 1.45196 * 109.47257 * 239.99679 * 2 1 3 5 5 C 1.34640 * 117.00081 * 90.00164 * 4 2 1 6 6 O 1.21506 * 119.99777 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99929 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00101 * 179.97438 * 7 5 4 9 9 C 1.50693 * 109.47162 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00184 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99801 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00399 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99938 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46938 * 89.99784 * 13 11 9 15 15 H 1.48499 * 109.46853 * 209.99634 * 13 11 9 16 16 H 1.48493 * 109.46913 * 329.99427 * 13 11 9 17 17 C 1.53001 * 109.47250 * 119.99349 * 2 1 3 18 18 C 1.53000 * 117.50223 * 185.00332 * 17 2 1 19 19 C 1.52997 * 117.49889 * 116.37594 * 17 2 1 20 20 H 1.09002 * 109.46986 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47066 * 300.00391 * 1 2 3 22 22 H 1.08997 * 109.46725 * 60.00450 * 1 2 3 23 23 H 0.97005 * 120.00289 * 359.97438 * 7 5 4 24 24 H 1.09006 * 109.46630 * 300.00111 * 8 7 5 25 25 H 1.09002 * 109.47049 * 59.99672 * 8 7 5 26 26 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 27 27 H 1.09002 * 115.55911 * 330.69022 * 17 2 1 28 28 H 1.08990 * 117.49990 * 145.01974 * 18 17 2 29 29 H 1.09004 * 117.49237 * 359.97438 * 18 17 2 30 30 H 1.08999 * 117.49685 * 0.02562 * 19 17 2 31 31 H 1.08999 * 117.52022 * 214.97106 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2179 0.0662 -2.2844 6 8 1.9968 1.2606 -2.2538 7 7 2.6660 -0.5074 -3.4187 8 6 2.8873 0.3094 -4.6147 9 6 3.3854 -0.5660 -5.7356 10 1 3.5238 -1.6247 -5.5733 11 6 3.6654 -0.0150 -6.9681 12 7 3.4974 1.2743 -7.1656 13 14 4.2836 -1.0999 -8.3575 14 1 3.1277 -1.6214 -9.1300 15 1 5.1600 -0.3044 -9.2542 16 1 5.0546 -2.2363 -7.7925 17 6 2.0401 -0.7211 1.2493 18 6 3.5502 -0.7263 1.4951 19 6 2.8440 -2.0066 1.0443 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 2.8421 -1.4610 -3.4433 24 1 1.9503 0.7814 -4.9106 25 1 3.6288 1.0782 -4.3975 26 1 3.6941 1.6618 -8.0328 27 1 1.3884 -0.6687 2.1215 28 1 3.8920 -0.6774 2.5288 29 1 4.1803 -0.2163 0.7664 30 1 3.0099 -2.3383 0.0193 31 1 2.7217 -2.8001 1.7815 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244314475.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:58 Heat of formation + Delta-G solvation = -92.354293 kcal Electronic energy + Delta-G solvation = -14087.881455 eV Core-core repulsion = 11562.011990 eV Total energy + Delta-G solvation = -2525.869465 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.56131 -38.96306 -36.86709 -36.17402 -34.45638 -32.27939 -29.38317 -25.59430 -24.64244 -23.30791 -22.44736 -21.12817 -20.16189 -18.20637 -17.81971 -17.29192 -16.72133 -16.32450 -15.74192 -15.36893 -14.77293 -14.33974 -14.03340 -13.82661 -13.47373 -13.03465 -12.85866 -12.72289 -12.40887 -12.25515 -12.17480 -11.90852 -11.63573 -11.51773 -11.14776 -10.88777 -10.82707 -10.01221 -8.31445 -6.48419 1.26655 1.45861 1.47052 1.59130 1.80846 2.38114 2.84756 3.04021 3.43612 3.59256 3.89082 4.00913 4.19251 4.29320 4.47864 4.61766 4.80889 4.85050 4.99566 5.01507 5.14860 5.16828 5.23660 5.31433 5.34336 5.52497 5.58591 5.78992 6.59259 6.72584 7.20756 7.45551 8.80856 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052575 B = 0.006040 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.448741 B = 4634.990737 C = 4890.352458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.066 0.934 4 O -0.361 6.361 5 C 0.636 3.364 6 O -0.620 6.620 7 N -0.686 5.686 8 C 0.283 3.717 9 C -0.559 4.559 10 H 0.085 0.915 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.988 3.012 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.257 1.257 17 C -0.156 4.156 18 C -0.182 4.182 19 C -0.163 4.163 20 H 0.077 0.923 21 H 0.103 0.897 22 H 0.037 0.963 23 H 0.411 0.589 24 H -0.004 1.004 25 H -0.005 1.005 26 H 0.271 0.729 27 H 0.154 0.846 28 H 0.121 0.879 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 -7.738 15.273 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.085 0.915 4 O -0.275 6.275 5 C 0.389 3.611 6 O -0.512 6.512 7 N -0.344 5.344 8 C 0.162 3.838 9 C -0.597 4.597 10 H 0.103 0.897 11 C -0.192 4.192 12 N -0.567 5.567 13 Si 0.811 3.189 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.180 1.180 17 C -0.174 4.174 18 C -0.218 4.218 19 C -0.200 4.200 20 H 0.096 0.904 21 H 0.121 0.879 22 H 0.056 0.944 23 H 0.247 0.753 24 H 0.014 0.986 25 H 0.013 0.987 26 H 0.080 0.920 27 H 0.171 0.829 28 H 0.140 0.860 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.587 -7.014 15.226 16.962 hybrid contribution 0.301 -0.076 -0.989 1.037 sum -2.286 -7.090 14.237 16.068 Atomic orbital electron populations 1.22148 0.92724 1.03635 1.03168 1.22340 0.95354 0.95754 0.80205 0.91545 1.86298 1.79945 1.41339 1.19937 1.18407 0.77150 0.83642 0.81895 1.90899 1.59285 1.16015 1.85050 1.45096 1.67211 1.13268 1.08783 1.18661 0.94526 0.90469 0.80124 1.21558 1.46457 0.95809 0.95856 0.89740 1.26040 0.94930 0.96627 1.01648 1.70125 1.48325 1.13116 1.25147 0.85107 0.78332 0.78143 0.77338 1.19491 1.20768 1.18039 1.22548 0.95258 1.02508 0.97062 1.23044 0.93721 1.02008 1.03072 1.22947 1.02669 0.91396 1.03014 0.90412 0.87863 0.94365 0.75269 0.98645 0.98682 0.92034 0.82881 0.86033 0.91191 0.89662 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.51 71.98 0.68 -3.20 16 2 C 0.12 3.42 2.91 30.60 0.09 3.51 16 3 H 0.07 2.22 7.16 -2.39 -0.02 2.20 16 4 O -0.36 -12.82 8.28 -55.50 -0.46 -13.28 16 5 C 0.64 28.46 8.72 129.79 1.13 29.59 16 6 O -0.62 -32.11 15.60 19.82 0.31 -31.80 16 7 N -0.69 -31.33 5.55 -594.62 -3.30 -34.63 16 8 C 0.28 15.77 5.43 85.63 0.46 16.24 16 9 C -0.56 -30.59 9.28 25.60 0.24 -30.35 16 10 H 0.08 4.21 7.60 -2.91 -0.02 4.18 16 11 C 0.01 0.42 5.46 84.65 0.46 0.88 16 12 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 13 Si 0.99 42.14 29.54 68.60 2.03 44.17 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 17 C -0.16 -3.23 5.74 -10.79 -0.06 -3.29 16 18 C -0.18 -3.78 10.24 30.60 0.31 -3.46 16 19 C -0.16 -3.33 9.87 30.60 0.30 -3.02 16 20 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.41 16.16 8.43 -92.70 -0.78 15.38 16 24 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 25 H 0.00 -0.30 8.14 -2.39 -0.02 -0.31 16 26 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.15 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.08 2.12 7.00 -2.39 -0.02 2.11 16 31 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -68.17 272.44 2.82 -65.35 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.34 Total: 18.59 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 3.62 Total: 6.89 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -3.02 Total: -89.92 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.15 Total: -45.08 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.17 2.82 -65.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244314475.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.003 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds