Wall clock time and date at job start Mon Mar 30 2020 03:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00175 * 2 1 4 4 C 1.50700 * 109.47520 * 293.95653 * 3 2 1 5 5 H 1.08002 * 119.99518 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00311 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99988 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00057 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47016 * 90.00367 * 8 6 4 10 10 H 1.48495 * 109.47474 * 210.00386 * 8 6 4 11 11 H 1.48501 * 109.47024 * 330.00652 * 8 6 4 12 12 C 1.46897 * 110.99822 * 123.95625 * 2 1 3 13 13 H 1.08999 * 112.84910 * 287.73861 * 12 2 1 14 14 C 1.53781 * 113.61516 * 156.54030 * 12 2 1 15 15 C 1.53786 * 87.17350 * 219.89393 * 14 12 2 16 16 C 1.53781 * 113.69238 * 59.00425 * 12 2 1 17 17 H 1.08996 * 113.61178 * 25.35712 * 16 12 2 18 18 C 1.50703 * 113.61495 * 254.54022 * 16 12 2 19 19 O 1.20830 * 120.00069 * 0.02562 * 18 16 12 20 20 O 1.34228 * 119.99960 * 179.97438 * 18 16 12 21 21 H 1.08996 * 109.46967 * 296.05277 * 1 2 3 22 22 H 1.09000 * 109.46712 * 56.04270 * 1 2 3 23 23 H 1.08997 * 109.47092 * 176.04195 * 1 2 3 24 24 H 1.08998 * 109.47134 * 53.95445 * 3 2 1 25 25 H 1.08998 * 109.47056 * 173.94944 * 3 2 1 26 26 H 0.97006 * 119.99728 * 179.97438 * 7 6 4 27 27 H 1.09002 * 113.61445 * 334.48392 * 14 12 2 28 28 H 1.09002 * 113.61408 * 105.30123 * 14 12 2 29 29 H 1.08992 * 113.61675 * 140.02412 * 15 14 12 30 30 H 1.09000 * 113.60973 * 270.92699 * 15 14 12 31 31 H 0.96701 * 116.99856 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0278 3.3491 -1.5288 7 7 1.7144 3.9390 -2.6617 8 14 3.0010 4.2758 -0.2313 9 1 4.4534 4.0623 -0.4556 10 1 2.6938 5.7257 -0.3235 11 1 2.6297 3.7758 1.1168 12 6 1.9954 -0.7660 1.1375 13 1 1.8614 -0.2544 2.0906 14 6 3.4229 -1.2938 0.9171 15 6 2.9690 -2.5897 1.6096 16 6 1.5398 -2.2347 1.1574 17 1 1.2823 -2.6252 0.1729 18 6 0.4878 -2.5264 2.1962 19 8 0.0847 -1.6412 2.9130 20 8 -0.0022 -3.7695 2.3245 21 1 -0.3633 0.4513 0.9232 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 1.5612 1.9273 0.8309 25 1 3.0797 1.3443 0.1083 26 1 1.9891 4.8552 -2.8237 27 1 3.6816 -1.4276 -0.1333 28 1 4.1823 -0.7444 1.4734 29 1 3.3633 -3.4938 1.1458 30 1 3.1007 -2.5758 2.6915 31 1 -0.6751 -3.9080 3.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249969923.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:20 Heat of formation + Delta-G solvation = -66.335285 kcal Electronic energy + Delta-G solvation = -14546.224933 eV Core-core repulsion = 12021.483737 eV Total energy + Delta-G solvation = -2524.741196 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64469 -38.41241 -35.99728 -34.90592 -32.24667 -28.14944 -27.24085 -25.67008 -23.26785 -22.05227 -20.46639 -19.05546 -18.01738 -16.90589 -16.87907 -15.70699 -14.93392 -14.52782 -14.07552 -13.81479 -13.55014 -12.59366 -12.42952 -12.34706 -11.84275 -11.68859 -11.46572 -11.37526 -11.03353 -10.70106 -10.61835 -10.40387 -10.24407 -10.06691 -9.77037 -9.24273 -8.55356 -7.41921 -6.03969 -4.01162 2.23842 3.08614 3.29697 3.37268 3.40473 4.43612 4.53455 4.57587 4.75697 4.99476 5.15080 5.29176 5.44561 5.73244 5.75638 5.87559 6.04582 6.12436 6.20666 6.35201 6.45953 6.56796 6.73039 6.90783 7.00209 7.60122 7.88837 7.92944 8.02957 8.66425 9.04201 9.57879 11.09082 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047071 B = 0.007903 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.698262 B = 3542.186400 C = 3710.849170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.074 3.926 13 H 0.070 0.930 14 C -0.124 4.124 15 C -0.120 4.120 16 C -0.103 4.103 17 H 0.132 0.868 18 C 0.485 3.515 19 O -0.513 6.513 20 O -0.518 6.518 21 H 0.016 0.984 22 H 0.081 0.919 23 H 0.041 0.959 24 H -0.011 1.011 25 H 0.026 0.974 26 H 0.263 0.737 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -13.713 9.430 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.036 4.036 13 H 0.088 0.912 14 C -0.162 4.162 15 C -0.158 4.158 16 C -0.122 4.122 17 H 0.150 0.850 18 C 0.327 3.673 19 O -0.400 6.400 20 O -0.330 6.330 21 H 0.035 0.965 22 H 0.100 0.900 23 H 0.060 0.940 24 H 0.007 0.993 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.104 -13.439 8.790 16.096 hybrid contribution -0.357 0.945 1.832 2.092 sum 0.747 -12.494 10.622 16.416 Atomic orbital electron populations 1.22192 0.88235 0.99547 1.01148 1.62274 1.07401 1.16771 1.37883 1.20155 0.95059 0.83861 0.97316 1.21028 1.35596 0.97247 1.00813 0.90094 1.24887 0.95823 0.97335 0.95261 1.69897 1.46943 1.13273 1.23881 0.86881 0.80878 0.79316 0.82844 1.20098 1.21201 1.19248 1.23108 0.94962 0.90553 0.94957 0.91192 1.22920 0.96157 0.95011 1.02138 1.22794 0.92602 0.99594 1.00856 1.22817 0.91621 1.00061 0.97705 0.85038 1.23673 0.80916 0.79258 0.83414 1.90718 1.58286 1.46676 1.44330 1.84583 1.56340 1.33322 1.58747 0.96547 0.90008 0.94048 0.99303 0.95612 0.92681 0.88230 0.91044 0.89891 0.90071 0.73826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.17 60.07 0.55 1.31 16 2 N -0.52 -10.99 4.71 -235.36 -1.11 -12.09 16 3 C 0.16 4.00 3.75 -4.98 -0.02 3.98 16 4 C -0.51 -14.55 9.01 -34.44 -0.31 -14.86 16 5 H 0.08 2.50 7.37 -52.49 -0.39 2.12 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 8 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 12 C 0.07 1.28 2.51 -66.90 -0.17 1.11 16 13 H 0.07 1.33 7.44 -51.93 -0.39 0.94 16 14 C -0.12 -1.78 7.50 -25.92 -0.19 -1.98 16 15 C -0.12 -1.40 7.65 -25.77 -0.20 -1.59 16 16 C -0.10 -1.44 2.89 -90.82 -0.26 -1.70 16 17 H 0.13 1.78 8.04 -51.93 -0.42 1.36 16 18 C 0.49 6.86 7.73 36.01 0.28 7.14 16 19 O -0.51 -8.93 16.66 -18.75 -0.31 -9.25 16 20 O -0.52 -5.60 13.42 -39.25 -0.53 -6.12 16 21 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 22 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 23 H 0.04 0.73 7.12 -51.93 -0.37 0.36 16 24 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 25 H 0.03 0.63 7.22 -51.93 -0.37 0.25 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.40 2.61 9.10 45.56 0.41 3.02 16 LS Contribution 261.84 15.07 3.95 3.95 Total: -1.00 -32.87 261.84 -5.84 -38.71 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.52 Total: -0.61 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.42 Total: -4.69 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.33 Total: -39.04 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.84 Total: -15.37 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.87 -5.84 -38.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249969923.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.628 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds