Wall clock time and date at job start Mon Mar 30 2020 03:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00175 * 2 1 4 4 C 1.50700 * 109.47520 * 293.95653 * 3 2 1 5 5 H 1.08002 * 119.99518 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00311 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99988 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00057 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47016 * 90.00367 * 8 6 4 10 10 H 1.48495 * 109.47474 * 210.00386 * 8 6 4 11 11 H 1.48501 * 109.47024 * 330.00652 * 8 6 4 12 12 C 1.46897 * 110.99822 * 123.95625 * 2 1 3 13 13 H 1.08999 * 112.84910 * 287.73861 * 12 2 1 14 14 C 1.53781 * 113.61516 * 156.54030 * 12 2 1 15 15 C 1.53786 * 87.17350 * 219.89393 * 14 12 2 16 16 C 1.53781 * 113.69238 * 59.00425 * 12 2 1 17 17 H 1.08996 * 113.61178 * 25.35712 * 16 12 2 18 18 C 1.50703 * 113.61495 * 254.54022 * 16 12 2 19 19 O 1.20830 * 120.00069 * 0.02562 * 18 16 12 20 20 O 1.34228 * 119.99960 * 179.97438 * 18 16 12 21 21 H 1.08996 * 109.46967 * 296.05277 * 1 2 3 22 22 H 1.09000 * 109.46712 * 56.04270 * 1 2 3 23 23 H 1.08997 * 109.47092 * 176.04195 * 1 2 3 24 24 H 1.08998 * 109.47134 * 53.95445 * 3 2 1 25 25 H 1.08998 * 109.47056 * 173.94944 * 3 2 1 26 26 H 0.97006 * 119.99728 * 179.97438 * 7 6 4 27 27 H 1.09002 * 113.61445 * 334.48392 * 14 12 2 28 28 H 1.09002 * 113.61408 * 105.30123 * 14 12 2 29 29 H 1.08992 * 113.61675 * 140.02412 * 15 14 12 30 30 H 1.09000 * 113.60973 * 270.92699 * 15 14 12 31 31 H 0.96701 * 116.99856 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0278 3.3491 -1.5288 7 7 1.7144 3.9390 -2.6617 8 14 3.0010 4.2758 -0.2313 9 1 4.4534 4.0623 -0.4556 10 1 2.6938 5.7257 -0.3235 11 1 2.6297 3.7758 1.1168 12 6 1.9954 -0.7660 1.1375 13 1 1.8614 -0.2544 2.0906 14 6 3.4229 -1.2938 0.9171 15 6 2.9690 -2.5897 1.6096 16 6 1.5398 -2.2347 1.1574 17 1 1.2823 -2.6252 0.1729 18 6 0.4878 -2.5264 2.1962 19 8 0.0847 -1.6412 2.9130 20 8 -0.0022 -3.7695 2.3245 21 1 -0.3633 0.4513 0.9232 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 1.5612 1.9273 0.8309 25 1 3.0797 1.3443 0.1083 26 1 1.9891 4.8552 -2.8237 27 1 3.6816 -1.4276 -0.1333 28 1 4.1823 -0.7444 1.4734 29 1 3.3633 -3.4938 1.1458 30 1 3.1007 -2.5758 2.6915 31 1 -0.6751 -3.9080 3.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249969923.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:20 Heat of formation + Delta-G solvation = -91.331562 kcal Electronic energy + Delta-G solvation = -14547.308853 eV Core-core repulsion = 12021.483737 eV Total energy + Delta-G solvation = -2525.825116 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.77890 -39.63234 -37.05446 -36.53762 -34.39263 -30.03964 -28.58249 -27.09058 -24.93278 -23.14549 -22.19508 -20.28315 -19.14353 -18.91673 -18.03879 -16.96188 -16.51182 -16.28560 -15.60776 -15.27204 -14.97673 -14.43181 -13.90240 -13.62488 -13.49786 -13.16923 -12.80532 -12.68563 -12.49963 -12.39497 -12.12283 -12.02996 -11.76439 -11.54077 -11.25016 -11.19888 -10.78279 -9.14332 -8.29081 -6.32277 1.15610 1.33377 1.35410 1.45985 2.11122 2.33630 3.03802 3.24379 3.36134 3.51660 3.85109 4.03720 4.35255 4.45821 4.57099 4.63241 4.76442 4.84335 4.88268 4.96724 5.06221 5.08689 5.17454 5.39976 5.53299 5.58999 5.96430 6.26195 6.61591 6.73488 6.99314 7.31254 8.87311 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047071 B = 0.007903 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.698262 B = 3542.186400 C = 3710.849170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.527 5.527 3 C 0.173 3.827 4 C -0.516 4.516 5 H 0.041 0.959 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.944 3.056 9 H -0.259 1.259 10 H -0.281 1.281 11 H -0.259 1.259 12 C 0.054 3.946 13 H 0.053 0.947 14 C -0.124 4.124 15 C -0.097 4.097 16 C -0.101 4.101 17 H 0.140 0.860 18 C 0.492 3.508 19 O -0.552 6.552 20 O -0.506 6.506 21 H 0.006 0.994 22 H 0.053 0.947 23 H 0.069 0.931 24 H -0.023 1.023 25 H 0.035 0.965 26 H 0.267 0.733 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -15.338 11.050 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.250 5.250 3 C 0.046 3.954 4 C -0.555 4.555 5 H 0.060 0.940 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.767 3.233 9 H -0.183 1.183 10 H -0.207 1.207 11 H -0.183 1.183 12 C -0.054 4.054 13 H 0.071 0.929 14 C -0.161 4.161 15 C -0.134 4.134 16 C -0.120 4.120 17 H 0.157 0.843 18 C 0.336 3.664 19 O -0.442 6.442 20 O -0.319 6.319 21 H 0.024 0.976 22 H 0.072 0.928 23 H 0.088 0.912 24 H -0.005 1.005 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 2.348 -15.119 10.421 18.511 hybrid contribution -0.846 1.346 1.283 2.043 sum 1.502 -13.772 11.704 18.136 Atomic orbital electron populations 1.22080 0.88239 1.00684 0.99266 1.62220 1.07531 1.14942 1.40351 1.19891 0.95459 0.85571 0.94448 1.21248 1.34962 0.97617 1.01642 0.94025 1.25802 0.97020 0.98360 0.97566 1.70044 1.48543 1.13917 1.26181 0.85763 0.79844 0.77728 0.79929 1.18320 1.20676 1.18291 1.23318 0.97732 0.91761 0.92634 0.92885 1.22942 0.94278 0.96454 1.02473 1.22753 0.89875 0.99314 1.01488 1.22805 0.93442 0.97357 0.98390 0.84260 1.23596 0.80472 0.79594 0.82706 1.90721 1.59619 1.48031 1.45874 1.84520 1.56737 1.31195 1.59420 0.97561 0.92807 0.91199 1.00511 0.94664 0.92381 0.88651 0.90327 0.86797 0.88936 0.71362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.89 9.17 127.69 1.17 3.06 16 2 N -0.53 -22.26 4.71 -898.54 -4.23 -26.49 16 3 C 0.17 8.58 3.75 85.56 0.32 8.90 16 4 C -0.52 -30.36 9.01 25.60 0.23 -30.13 16 5 H 0.04 2.70 7.37 -2.91 -0.02 2.68 16 6 C 0.01 0.59 5.47 84.65 0.46 1.05 16 7 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 8 Si 0.94 44.81 27.47 68.60 1.88 46.69 16 9 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.26 -11.82 6.54 99.48 0.65 -11.17 16 12 C 0.05 1.82 2.51 45.44 0.11 1.93 16 13 H 0.05 1.98 7.44 -2.39 -0.02 1.96 16 14 C -0.12 -3.23 7.50 31.12 0.23 -3.00 16 15 C -0.10 -1.87 7.65 31.21 0.24 -1.63 16 16 C -0.10 -2.56 2.89 -10.92 -0.03 -2.59 16 17 H 0.14 3.36 8.04 -2.39 -0.02 3.34 16 18 C 0.49 12.74 7.73 71.24 0.55 13.29 16 19 O -0.55 -18.51 16.66 21.95 0.37 -18.14 16 20 O -0.51 -9.21 13.42 -51.40 -0.69 -9.90 16 21 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 22 H 0.05 2.48 6.76 -2.39 -0.02 2.46 16 23 H 0.07 2.43 7.12 -2.39 -0.02 2.41 16 24 H -0.02 -1.17 7.18 -2.39 -0.02 -1.19 16 25 H 0.04 1.68 7.22 -2.39 -0.02 1.66 16 26 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 27 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.42 4.10 9.10 -74.06 -0.67 3.42 16 Total: -1.00 -72.40 261.84 1.32 -71.09 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 0.40 Total: 5.18 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 3.29 Total: -9.11 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -3.93 Total: -85.81 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.32 Total: -28.04 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -72.40 1.32 -71.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249969923.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.246 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds