Wall clock time and date at job start Mon Mar 30 2020 03:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46856 * 111.00088 * 2 1 4 4 C 1.53040 * 109.52254 * 185.84358 * 3 2 1 5 5 C 1.53122 * 109.27376 * 300.81472 * 4 3 2 6 6 H 1.09000 * 109.57791 * 297.72006 * 5 4 3 7 7 C 1.50702 * 109.52037 * 177.56296 * 5 4 3 8 8 O 1.20823 * 119.99847 * 240.32209 * 7 5 4 9 9 O 1.34226 * 120.00023 * 60.31747 * 7 5 4 10 10 C 1.53124 * 109.16093 * 57.65956 * 5 4 3 11 11 H 1.09003 * 109.49915 * 62.32668 * 10 5 4 12 12 C 1.50696 * 109.50118 * 182.39818 * 10 5 4 13 13 H 1.07995 * 120.00438 * 5.36735 * 12 10 5 14 14 C 1.37883 * 119.99673 * 185.36424 * 12 10 5 15 15 N 1.31516 * 119.99833 * 5.41652 * 14 12 10 16 16 Si 1.86799 * 119.99742 * 185.14764 * 14 12 10 17 17 H 1.48499 * 109.47314 * 85.00002 * 16 14 12 18 18 H 1.48509 * 109.46884 * 204.99717 * 16 14 12 19 19 H 1.48493 * 109.47207 * 324.99533 * 16 14 12 20 20 C 1.46848 * 111.00358 * 124.20869 * 2 1 3 21 21 H 1.09006 * 109.46929 * 56.04768 * 1 2 3 22 22 H 1.08999 * 109.46769 * 176.04685 * 1 2 3 23 23 H 1.08994 * 109.46900 * 296.05002 * 1 2 3 24 24 H 1.08994 * 109.46325 * 65.82405 * 3 2 1 25 25 H 1.08999 * 109.45895 * 305.85268 * 3 2 1 26 26 H 1.09000 * 109.49948 * 180.88207 * 4 3 2 27 27 H 1.08996 * 109.50913 * 60.75723 * 4 3 2 28 28 H 0.96701 * 117.00172 * 180.02562 * 9 7 5 29 29 H 0.97001 * 119.99452 * 179.72190 * 15 14 12 30 30 H 1.09000 * 109.45995 * 54.14244 * 20 2 1 31 31 H 1.09002 * 109.46102 * 294.17758 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1469 5 6 4.1188 0.5370 1.0144 6 1 3.8897 1.0351 1.9564 7 6 5.6133 0.4464 0.8431 8 8 6.1448 -0.6335 0.7369 9 8 6.3540 1.5653 0.8084 10 6 3.5181 -0.8714 1.0209 11 1 3.7820 -1.3838 0.0957 12 6 4.0599 -1.6439 2.1959 13 1 4.6937 -1.1527 2.9193 14 6 3.7462 -2.9780 2.3475 15 7 3.0638 -3.6034 1.4132 16 14 4.2972 -3.8991 3.8764 17 1 3.3080 -3.6895 4.9639 18 1 4.3978 -5.3490 3.5714 19 1 5.6237 -3.3911 4.3092 20 6 1.9953 -0.7707 1.1337 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 -0.3633 0.4513 0.9232 24 1 1.7325 1.8609 0.9375 25 1 1.5634 1.9257 -0.8330 26 1 3.9099 2.3513 -0.1311 27 1 3.7814 0.8568 -1.0907 28 1 7.3083 1.4568 0.6965 29 1 2.8466 -4.5429 1.5181 30 1 1.5635 -1.7715 1.1242 31 1 1.7325 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250608125.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:33 Heat of formation + Delta-G solvation = -95.056528 kcal Electronic energy + Delta-G solvation = -15022.359928 eV Core-core repulsion = 12496.373285 eV Total energy + Delta-G solvation = -2525.986643 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.69826 -37.77606 -35.33679 -33.44461 -32.35271 -29.64494 -26.72115 -25.10472 -23.02228 -21.70646 -20.57639 -18.70519 -17.16068 -16.46110 -15.87201 -14.81962 -14.65211 -14.27384 -14.21315 -13.66002 -12.84688 -12.70918 -12.36929 -12.02371 -11.69382 -11.15663 -11.04132 -10.89339 -10.76598 -10.60634 -10.33900 -10.17772 -10.04098 -9.50496 -9.13533 -8.89143 -8.31249 -7.54071 -5.94615 -3.95908 3.13904 3.35146 3.41674 3.45842 3.84071 4.49107 4.71110 5.39249 5.41113 5.54891 5.64230 5.82355 5.95976 6.04050 6.17726 6.23531 6.27485 6.32510 6.57931 6.63825 6.80690 6.86802 7.21066 7.58510 7.70497 7.89627 7.92815 8.11955 8.43140 8.77847 9.02164 9.65457 11.14324 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.014617 C = 0.009612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.538083 B = 1915.146908 C = 2912.369098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.548 5.548 3 C 0.062 3.938 4 C -0.106 4.106 5 C -0.071 4.071 6 H 0.089 0.911 7 C 0.474 3.526 8 O -0.480 6.480 9 O -0.535 6.535 10 C 0.069 3.931 11 H 0.052 0.948 12 C -0.500 4.500 13 H 0.051 0.949 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.069 3.931 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.015 0.985 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.394 0.606 29 H 0.260 0.740 30 H 0.096 0.904 31 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 9.601 -1.865 9.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.273 5.273 3 C -0.067 4.067 4 C -0.144 4.144 5 C -0.090 4.090 6 H 0.107 0.893 7 C 0.314 3.686 8 O -0.363 6.363 9 O -0.348 6.348 10 C 0.050 3.950 11 H 0.070 0.930 12 C -0.538 4.538 13 H 0.069 0.931 14 C -0.136 4.136 15 N -0.526 5.526 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.058 4.058 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.251 0.749 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -1.445 8.900 -2.320 9.310 hybrid contribution 0.666 -0.270 1.589 1.744 sum -0.779 8.630 -0.731 8.696 Atomic orbital electron populations 1.22262 0.88885 1.01736 0.98969 1.62085 1.06318 1.12309 1.46595 1.21970 0.94861 0.90475 0.99377 1.21567 0.94970 0.99240 0.98613 1.21366 0.85709 1.02551 0.99355 0.89333 1.23770 0.91114 0.81032 0.72639 1.90743 1.73398 1.29205 1.42996 1.84595 1.24589 1.39408 1.86192 1.18657 0.89568 0.87149 0.99621 0.93013 1.20896 1.29760 0.94911 1.08254 0.93089 1.24883 0.95251 0.97308 0.96190 1.69943 1.39949 1.10376 1.32346 0.86663 0.79050 0.79047 0.83565 1.20768 1.21280 1.20102 1.22388 0.98285 0.97846 0.87267 0.92622 0.91593 0.96659 0.95568 0.91634 0.91600 0.91146 0.74901 0.93033 0.88540 0.97052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.59 60.06 0.58 1.07 16 2 N -0.55 -10.78 4.91 -242.96 -1.19 -11.97 16 3 C 0.06 1.03 5.46 -3.83 -0.02 1.01 16 4 C -0.11 -1.83 5.31 -26.65 -0.14 -1.97 16 5 C -0.07 -1.46 2.16 -91.64 -0.20 -1.66 16 6 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 7 C 0.47 9.86 7.28 36.01 0.26 10.12 16 8 O -0.48 -11.97 15.66 -18.75 -0.29 -12.26 16 9 O -0.54 -8.62 13.36 -39.25 -0.52 -9.14 16 10 C 0.07 1.72 1.28 -91.69 -0.12 1.61 16 11 H 0.05 1.49 8.02 -51.93 -0.42 1.08 16 12 C -0.50 -13.88 6.94 -34.44 -0.24 -14.12 16 13 H 0.05 1.43 7.64 -52.49 -0.40 1.03 16 14 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 15 N -0.89 -25.85 11.98 55.43 0.66 -25.19 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.07 1.59 4.57 -3.84 -0.02 1.58 16 21 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 22 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.39 4.57 9.10 45.56 0.41 4.98 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.10 2.50 6.75 -51.93 -0.35 2.15 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 257.63 15.07 3.88 3.88 Total: -1.00 -31.59 257.63 -6.16 -37.75 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.69 Total: 0.62 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 0.01 Total: -0.61 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.53 Total: -37.16 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.82 Total: -21.40 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.59 -6.16 -37.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250608125.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.303 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds