Wall clock time and date at job start Mon Mar 30 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46856 * 111.00088 * 2 1 4 4 C 1.53040 * 109.52254 * 185.84358 * 3 2 1 5 5 C 1.53122 * 109.27376 * 300.81472 * 4 3 2 6 6 H 1.09000 * 109.57791 * 297.72006 * 5 4 3 7 7 C 1.50702 * 109.52037 * 177.56296 * 5 4 3 8 8 O 1.20823 * 119.99847 * 240.32209 * 7 5 4 9 9 O 1.34226 * 120.00023 * 60.31747 * 7 5 4 10 10 C 1.53124 * 109.16093 * 57.65956 * 5 4 3 11 11 H 1.09003 * 109.49915 * 62.32668 * 10 5 4 12 12 C 1.50696 * 109.50118 * 182.39818 * 10 5 4 13 13 H 1.07995 * 120.00438 * 5.36735 * 12 10 5 14 14 C 1.37883 * 119.99673 * 185.36424 * 12 10 5 15 15 N 1.31516 * 119.99833 * 5.41652 * 14 12 10 16 16 Si 1.86799 * 119.99742 * 185.14764 * 14 12 10 17 17 H 1.48499 * 109.47314 * 85.00002 * 16 14 12 18 18 H 1.48509 * 109.46884 * 204.99717 * 16 14 12 19 19 H 1.48493 * 109.47207 * 324.99533 * 16 14 12 20 20 C 1.46848 * 111.00358 * 124.20869 * 2 1 3 21 21 H 1.09006 * 109.46929 * 56.04768 * 1 2 3 22 22 H 1.08999 * 109.46769 * 176.04685 * 1 2 3 23 23 H 1.08994 * 109.46900 * 296.05002 * 1 2 3 24 24 H 1.08994 * 109.46325 * 65.82405 * 3 2 1 25 25 H 1.08999 * 109.45895 * 305.85268 * 3 2 1 26 26 H 1.09000 * 109.49948 * 180.88207 * 4 3 2 27 27 H 1.08996 * 109.50913 * 60.75723 * 4 3 2 28 28 H 0.96701 * 117.00172 * 180.02562 * 9 7 5 29 29 H 0.97001 * 119.99452 * 179.72190 * 15 14 12 30 30 H 1.09000 * 109.45995 * 54.14244 * 20 2 1 31 31 H 1.09002 * 109.46102 * 294.17758 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1469 5 6 4.1188 0.5370 1.0144 6 1 3.8897 1.0351 1.9564 7 6 5.6133 0.4464 0.8431 8 8 6.1448 -0.6335 0.7369 9 8 6.3540 1.5653 0.8084 10 6 3.5181 -0.8714 1.0209 11 1 3.7820 -1.3838 0.0957 12 6 4.0599 -1.6439 2.1959 13 1 4.6937 -1.1527 2.9193 14 6 3.7462 -2.9780 2.3475 15 7 3.0638 -3.6034 1.4132 16 14 4.2972 -3.8991 3.8764 17 1 3.3080 -3.6895 4.9639 18 1 4.3978 -5.3490 3.5714 19 1 5.6237 -3.3911 4.3092 20 6 1.9953 -0.7707 1.1337 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 -0.3633 0.4513 0.9232 24 1 1.7325 1.8609 0.9375 25 1 1.5634 1.9257 -0.8330 26 1 3.9099 2.3513 -0.1311 27 1 3.7814 0.8568 -1.0907 28 1 7.3083 1.4568 0.6965 29 1 2.8466 -4.5429 1.5181 30 1 1.5635 -1.7715 1.1242 31 1 1.7325 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250608125.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:32 Heat of formation + Delta-G solvation = -118.801114 kcal Electronic energy + Delta-G solvation = -15023.389571 eV Core-core repulsion = 12496.373285 eV Total energy + Delta-G solvation = -2527.016285 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.33238 -39.34252 -36.89597 -35.29995 -34.09496 -31.43095 -28.20181 -27.07902 -24.53867 -23.45257 -22.10491 -20.38131 -18.74909 -18.49613 -17.50326 -16.61750 -16.39782 -15.84024 -15.78347 -15.17063 -14.46984 -14.36750 -14.12417 -13.59852 -13.16614 -12.90418 -12.71278 -12.60088 -12.43555 -12.33604 -12.11605 -11.89043 -11.83643 -11.28361 -10.93001 -10.78777 -10.44408 -9.04823 -8.08955 -6.16156 1.37922 1.39846 1.48622 1.49944 2.36034 2.44056 3.13820 3.35973 3.97967 4.06683 4.16540 4.47753 4.59782 4.63145 4.76101 4.83583 4.85682 4.89797 5.04086 5.08766 5.17166 5.24285 5.58579 5.78095 5.84395 5.90292 6.18426 6.42814 6.49136 6.89680 7.27385 7.47977 8.99323 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.014617 C = 0.009612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.538083 B = 1915.146908 C = 2912.369098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.568 5.568 3 C 0.060 3.940 4 C -0.098 4.098 5 C -0.074 4.074 6 H 0.100 0.900 7 C 0.482 3.518 8 O -0.533 6.533 9 O -0.513 6.513 10 C 0.071 3.929 11 H 0.001 0.999 12 C -0.510 4.510 13 H 0.043 0.957 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.946 3.054 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.278 1.278 20 C 0.086 3.914 21 H 0.087 0.913 22 H 0.052 0.948 23 H 0.025 0.975 24 H 0.038 0.962 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.418 0.582 29 H 0.259 0.741 30 H 0.059 0.941 31 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 11.797 -1.629 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.293 5.293 3 C -0.067 4.067 4 C -0.136 4.136 5 C -0.093 4.093 6 H 0.118 0.882 7 C 0.325 3.675 8 O -0.421 6.421 9 O -0.327 6.327 10 C 0.052 3.948 11 H 0.020 0.980 12 C -0.549 4.549 13 H 0.061 0.939 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.772 3.228 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.203 1.203 20 C -0.042 4.042 21 H 0.105 0.895 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.278 0.722 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -1.718 11.147 -2.084 11.469 hybrid contribution 0.803 -0.867 1.467 1.883 sum -0.915 10.280 -0.618 10.339 Atomic orbital electron populations 1.22311 0.86774 1.01769 1.00844 1.61978 1.08393 1.14160 1.44756 1.22116 0.94252 0.88904 1.01441 1.21577 0.95567 1.00274 0.96165 1.21279 0.86024 1.00390 1.01585 0.88191 1.23744 0.91468 0.81051 0.71263 1.90733 1.74337 1.31318 1.45676 1.84502 1.26412 1.36682 1.85111 1.18450 0.91156 0.89219 0.95991 0.98029 1.21211 1.29299 0.95525 1.08859 0.93905 1.25629 0.95619 0.98344 0.98852 1.70075 1.41154 1.10468 1.33963 0.85756 0.78646 0.77721 0.80644 1.19260 1.21097 1.20322 1.21915 0.96853 0.96724 0.88688 0.89457 0.92866 0.95644 0.94331 0.88182 0.87945 0.92417 0.72153 0.93170 0.92265 0.97145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.59 127.69 1.22 2.18 16 2 N -0.57 -21.61 4.91 -922.59 -4.53 -26.14 16 3 C 0.06 1.81 5.46 86.32 0.47 2.29 16 4 C -0.10 -3.13 5.31 30.65 0.16 -2.96 16 5 C -0.07 -2.97 2.16 -11.46 -0.02 -3.00 16 6 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 7 C 0.48 19.64 7.28 71.24 0.52 20.16 16 8 O -0.53 -26.99 15.66 21.97 0.34 -26.64 16 9 O -0.51 -15.08 13.36 -51.38 -0.69 -15.76 16 10 C 0.07 3.63 1.28 -11.49 -0.01 3.61 16 11 H 0.00 0.09 8.02 -2.39 -0.02 0.07 16 12 C -0.51 -29.03 6.94 25.60 0.18 -28.85 16 13 H 0.04 2.44 7.64 -2.91 -0.02 2.42 16 14 C 0.01 0.81 5.27 84.66 0.45 1.26 16 15 N -0.92 -55.32 11.98 21.45 0.26 -55.07 16 16 Si 0.95 45.74 29.54 68.60 2.03 47.76 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 20 C 0.09 4.04 4.57 86.32 0.39 4.43 16 21 H 0.09 2.13 8.10 -2.38 -0.02 2.11 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.10 2.37 8.09 -2.39 -0.02 2.36 16 26 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.42 8.47 9.10 -74.06 -0.67 7.79 16 29 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.06 3.19 6.75 -2.39 -0.02 3.18 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -70.74 257.63 1.21 -69.53 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.44 Total: 7.21 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 3.36 Total: -0.89 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -4.27 Total: -81.21 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.34 Total: -42.41 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -70.74 1.21 -69.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250608125.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.269 kcal (2) G-P(sol) polarization free energy of solvation -70.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds