Wall clock time and date at job start Mon Mar 30 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47540 * 2 1 4 4 C 1.50699 * 109.47330 * 239.99761 * 2 1 3 5 5 H 1.08002 * 120.00492 * 245.43744 * 4 2 1 6 6 C 1.37875 * 120.00141 * 65.43037 * 4 2 1 7 7 N 1.31509 * 120.00641 * 196.51808 * 6 4 2 8 8 Si 1.86807 * 119.99552 * 16.52036 * 6 4 2 9 9 H 1.48499 * 109.46966 * 95.50035 * 8 6 4 10 10 H 1.48503 * 109.47062 * 215.49657 * 8 6 4 11 11 H 1.48502 * 109.47007 * 335.49660 * 8 6 4 12 12 N 1.46905 * 109.47299 * 120.00181 * 2 1 3 13 13 C 1.47201 * 110.99963 * 62.19079 * 12 2 1 14 14 C 1.51300 * 108.46270 * 177.88752 * 13 12 2 15 15 O 1.20824 * 121.09219 * 131.57460 * 14 13 12 16 16 O 1.35098 * 117.81222 * 311.85672 * 14 13 12 17 17 C 1.45331 * 115.35046 * 47.98947 * 16 14 13 18 18 C 1.47011 * 111.00180 * 185.78397 * 12 2 1 19 19 H 1.09002 * 109.47185 * 294.68835 * 18 12 2 20 20 C 1.52998 * 109.47654 * 54.70200 * 18 12 2 21 21 H 1.08997 * 109.47402 * 300.89330 * 1 2 3 22 22 H 1.09002 * 109.47283 * 60.89483 * 1 2 3 23 23 H 1.09006 * 109.47258 * 180.89250 * 1 2 3 24 24 H 0.97003 * 120.00685 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.63781 * 58.20207 * 13 12 2 26 26 H 1.08991 * 109.64230 * 297.58118 * 13 12 2 27 27 H 1.08999 * 109.64851 * 189.46443 * 17 16 14 28 28 H 1.09005 * 109.49828 * 69.22835 * 17 16 14 29 29 H 1.08997 * 109.47120 * 53.31605 * 20 18 12 30 30 H 1.08999 * 109.47337 * 173.31600 * 20 18 12 31 31 H 1.09003 * 109.47038 * 293.31302 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5789 -1.6369 -1.1338 6 6 1.7941 -0.1778 -2.4796 7 7 1.9320 -0.9273 -3.5514 8 14 1.2753 1.6087 -2.6497 9 1 2.4703 2.4474 -2.9214 10 1 0.3128 1.7399 -3.7729 11 1 0.6305 2.0590 -1.3901 12 7 2.0197 -0.6925 1.1994 13 6 1.5911 -2.1008 1.2074 14 6 2.1681 -2.7703 2.4354 15 8 1.4762 -3.4429 3.1626 16 8 3.4810 -2.5865 2.6953 17 6 3.9417 -1.2097 2.6294 18 6 3.4827 -0.5935 1.3046 19 1 3.9437 -1.1300 0.4753 20 6 3.8993 0.8778 1.2549 21 1 -0.3634 0.5276 0.8818 22 1 -0.3634 0.4999 -0.8979 23 1 -0.3634 -1.0276 0.0160 24 1 1.7648 -0.5525 -4.4303 25 1 1.9584 -2.6006 0.3111 26 1 0.5029 -2.1523 1.2393 27 1 5.0299 -1.1842 2.6861 28 1 3.5195 -0.6446 3.4604 29 1 3.3473 1.4374 2.0100 30 1 4.9683 0.9596 1.4514 31 1 3.6791 1.2846 0.2679 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251796920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:08 Heat of formation + Delta-G solvation = -90.624839 kcal Electronic energy + Delta-G solvation = -15166.805598 eV Core-core repulsion = 12641.011128 eV Total energy + Delta-G solvation = -2525.794470 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.76137 -39.19327 -37.84556 -34.80735 -33.37001 -31.61228 -27.77943 -27.40500 -26.97564 -23.36745 -21.88863 -20.72741 -19.11214 -18.14235 -17.96773 -16.79582 -16.57538 -16.33427 -15.80341 -15.15122 -14.75108 -14.49371 -14.26197 -13.72762 -13.62322 -13.33676 -12.77791 -12.69859 -12.49846 -12.34839 -12.31476 -11.88004 -11.60678 -11.45966 -11.41153 -10.84180 -10.60164 -9.21420 -8.32379 -6.32819 0.68635 1.35903 1.41698 1.49820 2.20615 2.35561 2.87607 3.03938 3.31854 3.76458 4.06876 4.22779 4.34104 4.54995 4.61728 4.69027 4.72623 4.84075 4.89141 4.93428 5.16456 5.26544 5.38261 5.47184 5.52140 5.90844 6.01150 6.13736 6.26284 6.28973 6.71184 7.33564 8.83651 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038574 B = 0.011045 C = 0.010190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.703542 B = 2534.562387 C = 2747.130736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.178 3.822 3 H 0.060 0.940 4 C -0.548 4.548 5 H 0.036 0.964 6 C 0.028 3.972 7 N -0.938 5.938 8 Si 0.923 3.077 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.224 1.224 12 N -0.512 5.512 13 C 0.016 3.984 14 C 0.508 3.492 15 O -0.494 6.494 16 O -0.392 6.392 17 C 0.086 3.914 18 C 0.034 3.966 19 H 0.040 0.960 20 C -0.134 4.134 21 H 0.059 0.941 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.264 0.736 25 H 0.070 0.930 26 H 0.111 0.889 27 H 0.146 0.854 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 5.694 9.790 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.070 3.930 3 H 0.078 0.922 4 C -0.586 4.586 5 H 0.054 0.946 6 C -0.172 4.172 7 N -0.577 5.577 8 Si 0.747 3.253 9 H -0.201 1.201 10 H -0.219 1.219 11 H -0.146 1.146 12 N -0.238 5.238 13 C -0.113 4.113 14 C 0.350 3.650 15 O -0.377 6.377 16 O -0.312 6.312 17 C 0.013 3.987 18 C -0.075 4.075 19 H 0.058 0.942 20 C -0.191 4.191 21 H 0.078 0.922 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.129 0.871 27 H 0.163 0.837 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.530 5.458 10.442 12.051 hybrid contribution 0.064 -0.095 -1.829 1.832 sum 2.594 5.363 8.614 10.473 Atomic orbital electron populations 1.22091 0.96832 1.00710 1.00161 1.19723 0.92830 0.95162 0.85290 0.92236 1.21653 1.36534 1.08832 0.91623 0.94556 1.25716 0.94485 1.01633 0.95347 1.70137 1.50671 1.37640 0.99239 0.86191 0.78589 0.81004 0.79512 1.20137 1.21879 1.14616 1.63079 1.10925 1.09473 1.40342 1.22797 1.02792 0.91364 0.94396 1.23438 0.80189 0.77120 0.84288 1.90563 1.57696 1.38912 1.50533 1.86513 1.24880 1.32519 1.87270 1.23837 1.02209 0.75442 0.97217 1.22363 0.88513 0.99796 0.96808 0.94200 1.21709 1.02513 0.92311 1.02599 0.92213 0.93826 0.93853 0.92651 0.91189 0.87068 0.83673 0.88831 0.90572 0.89282 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 8.42 71.98 0.61 -4.82 16 2 C 0.18 7.29 1.53 44.17 0.07 7.36 16 3 H 0.06 2.37 4.53 -2.39 -0.01 2.36 16 4 C -0.55 -27.85 7.53 25.60 0.19 -27.65 16 5 H 0.04 2.09 6.04 -2.91 -0.02 2.07 16 6 C 0.03 1.48 5.34 84.65 0.45 1.93 16 7 N -0.94 -55.28 13.96 21.45 0.30 -54.98 16 8 Si 0.92 39.92 25.84 68.60 1.77 41.69 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.22 -8.56 5.55 99.48 0.55 -8.01 16 12 N -0.51 -18.61 4.54 -852.27 -3.87 -22.48 16 13 C 0.02 0.60 5.07 85.69 0.43 1.03 16 14 C 0.51 18.99 7.75 71.43 0.55 19.54 16 15 O -0.49 -20.55 17.95 21.85 0.39 -20.16 16 16 O -0.39 -13.19 10.64 -60.24 -0.64 -13.83 16 17 C 0.09 2.16 6.52 72.03 0.47 2.63 16 18 C 0.03 1.07 2.26 44.94 0.10 1.17 16 19 H 0.04 1.51 7.12 -2.39 -0.02 1.49 16 20 C -0.13 -3.46 8.56 71.98 0.62 -2.85 16 21 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.04 1.72 5.17 -2.39 -0.01 1.71 16 23 H 0.04 1.69 6.46 -2.38 -0.02 1.68 16 24 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 25 H 0.07 3.05 6.20 -2.39 -0.01 3.03 16 26 H 0.11 4.17 6.48 -2.39 -0.02 4.15 16 27 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.54 6.62 -2.39 -0.02 1.52 16 Total: -1.00 -63.06 243.31 2.42 -60.64 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.98 Total: 10.78 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 3.49 Total: -1.66 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -3.57 Total: -77.46 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.25 Total: -33.99 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.77 Total: 41.69 kcal Total: -63.06 2.42 -60.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251796920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.984 kcal (2) G-P(sol) polarization free energy of solvation -63.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds