Wall clock time and date at job start Mon Mar 30 2020 03:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99942 * 2 1 4 4 N 1.34772 * 120.00027 * 180.02562 * 2 1 3 5 5 C 1.48181 * 118.51475 * 357.25927 * 4 2 1 6 6 C 1.54290 * 110.69932 * 138.79424 * 5 4 2 7 7 O 1.40533 * 109.86638 * 320.61752 * 6 5 4 8 8 C 1.42560 * 113.54151 * 95.28490 * 7 6 5 9 9 C 1.47682 * 113.66619 * 272.24549 * 8 7 6 10 10 C 1.44457 * 118.51747 * 177.27923 * 4 2 1 11 11 H 1.08998 * 109.51950 * 148.93749 * 10 4 2 12 12 C 1.50705 * 109.49159 * 28.87039 * 10 4 2 13 13 H 1.08002 * 119.99969 * 274.19814 * 12 10 4 14 14 C 1.37877 * 120.00028 * 94.19587 * 12 10 4 15 15 N 1.31513 * 120.00155 * 354.67933 * 14 12 10 16 16 Si 1.86803 * 119.99845 * 174.67872 * 14 12 10 17 17 H 1.48499 * 109.46757 * 90.00185 * 16 14 12 18 18 H 1.48493 * 109.47371 * 330.00372 * 16 14 12 19 19 H 1.48500 * 109.47005 * 210.00117 * 16 14 12 20 20 H 1.08994 * 109.46977 * 185.49764 * 1 2 3 21 21 H 1.09000 * 109.46790 * 305.49032 * 1 2 3 22 22 H 1.08992 * 109.46974 * 65.49368 * 1 2 3 23 23 H 1.09005 * 109.22965 * 18.48061 * 5 4 2 24 24 H 1.08997 * 109.23605 * 259.11206 * 5 4 2 25 25 H 1.08994 * 109.41308 * 200.49629 * 6 5 4 26 26 H 1.09000 * 109.33777 * 80.69018 * 6 5 4 27 27 H 1.09005 * 108.64114 * 151.16014 * 8 7 6 28 28 H 1.09004 * 108.53767 * 33.24858 * 8 7 6 29 29 H 1.09005 * 109.43587 * 300.73393 * 9 8 7 30 30 H 1.08997 * 109.43779 * 180.86985 * 9 8 7 31 31 H 0.97001 * 119.99926 * 4.93194 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4083 -2.4301 0.0612 6 6 2.0100 -3.4846 -0.8909 7 8 2.4193 -2.8702 -2.0867 8 6 3.8004 -2.5172 -2.1018 9 6 4.0764 -1.1791 -1.5410 10 6 3.6238 -1.1305 -0.0608 11 1 4.0325 -1.9884 0.4731 12 6 4.1214 0.1416 0.5758 13 1 4.1898 1.0472 -0.0088 14 6 4.4895 0.1495 1.9045 15 7 4.3084 -0.9233 2.6434 16 14 5.2453 1.6840 2.6553 17 1 4.1694 2.5474 3.2050 18 1 5.9930 2.4292 1.6110 19 1 6.1741 1.2950 3.7467 20 1 -0.3633 -1.0229 0.0985 21 1 -0.3633 0.5966 0.8368 22 1 -0.3633 0.4262 -0.9350 23 1 0.3756 -2.2337 -0.2272 24 1 1.4286 -2.8140 1.0811 25 1 1.2594 -4.2433 -1.1121 26 1 2.8696 -3.9541 -0.4125 27 1 4.1555 -2.5434 -3.1321 28 1 4.3538 -3.2579 -1.5245 29 1 3.5316 -0.4272 -2.1119 30 1 5.1454 -0.9744 -1.6004 31 1 3.9830 -1.7422 2.2379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259821572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:57 Heat of formation + Delta-G solvation = -61.218481 kcal Electronic energy + Delta-G solvation = -15488.064793 eV Core-core repulsion = 12963.545478 eV Total energy + Delta-G solvation = -2524.519315 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.52332 -37.60125 -34.40271 -33.35887 -31.65739 -29.21816 -27.95593 -25.96496 -23.19409 -21.92560 -21.02335 -18.39604 -16.98499 -16.44762 -15.62137 -15.24039 -15.03108 -14.30682 -13.79306 -13.62902 -13.00876 -12.76942 -12.38740 -12.31175 -11.69292 -11.46605 -11.32028 -10.89827 -10.69098 -10.44631 -10.37953 -10.04825 -9.82099 -9.46708 -8.74061 -8.39403 -7.97114 -7.30840 -6.26627 -3.84085 3.52606 3.55107 3.72670 3.88251 4.08855 4.31669 4.62911 5.22109 5.33859 5.45996 5.52690 5.59518 5.70909 5.79945 5.90713 5.95122 6.01808 6.06474 6.18922 6.40066 6.46492 6.66485 6.72855 7.19016 7.68047 7.89170 8.10310 8.58281 8.83332 8.96393 9.59852 9.70835 11.10263 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.013290 C = 0.011536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.761901 B = 2106.363105 C = 2426.628127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.501 3.499 3 O -0.513 6.513 4 N -0.593 5.593 5 C 0.066 3.934 6 C 0.053 3.947 7 O -0.374 6.374 8 C 0.066 3.934 9 C -0.156 4.156 10 C 0.246 3.754 11 H 0.044 0.956 12 C -0.538 4.538 13 H 0.067 0.933 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 1.075 2.925 17 H -0.290 1.290 18 H -0.288 1.288 19 H -0.289 1.289 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 -5.401 -5.955 9.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.287 3.713 3 O -0.388 6.388 4 N -0.328 5.328 5 C -0.058 4.058 6 C -0.025 4.025 7 O -0.292 6.292 8 C -0.010 4.010 9 C -0.195 4.195 10 C 0.146 3.854 11 H 0.062 0.938 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.189 4.189 15 N -0.557 5.557 16 Si 0.904 3.096 17 H -0.217 1.217 18 H -0.215 1.215 19 H -0.215 1.215 20 H 0.090 0.910 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.214 -4.168 -4.703 7.567 hybrid contribution -0.668 -0.858 -1.099 1.546 sum -4.883 -5.027 -5.802 9.098 Atomic orbital electron populations 1.22187 0.95872 1.03047 1.03479 1.20343 0.88729 0.84566 0.77618 1.90720 1.69069 1.31426 1.47564 1.48873 1.07799 1.03620 1.72540 1.22793 0.96634 0.87492 0.98854 1.22792 0.99417 0.94213 0.86117 1.87376 1.26782 1.79370 1.35661 1.21658 0.81455 0.97391 1.00476 1.21949 1.01578 0.96043 0.99962 1.18985 0.76680 0.99152 0.90555 0.93839 1.22090 1.41243 0.95817 0.98565 0.91480 1.25836 0.95568 1.03245 0.94210 1.70826 1.45048 1.02189 1.37649 0.83444 0.76248 0.74601 0.75279 1.21703 1.21465 1.21496 0.91012 0.90294 0.90343 0.90143 0.92233 0.89754 0.92973 0.91100 0.93988 0.92294 0.90601 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 10.00 36.01 0.36 -2.87 16 2 C 0.50 11.80 7.51 -10.99 -0.08 11.72 16 3 O -0.51 -14.34 13.72 5.56 0.08 -14.27 16 4 N -0.59 -13.36 2.52 -165.63 -0.42 -13.78 16 5 C 0.07 1.15 6.37 -2.44 -0.02 1.14 16 6 C 0.05 0.82 6.50 37.83 0.25 1.07 16 7 O -0.37 -6.68 10.23 -34.11 -0.35 -7.02 16 8 C 0.07 1.17 6.04 34.59 0.21 1.38 16 9 C -0.16 -3.34 5.33 -28.31 -0.15 -3.49 16 10 C 0.25 6.09 1.87 -69.18 -0.13 5.96 16 11 H 0.04 1.13 6.41 -51.93 -0.33 0.80 16 12 C -0.54 -15.43 5.69 -34.44 -0.20 -15.63 16 13 H 0.07 2.06 6.80 -52.49 -0.36 1.70 16 14 C 0.01 0.42 5.45 -17.82 -0.10 0.32 16 15 N -0.92 -27.71 13.63 55.43 0.76 -26.95 16 16 Si 1.08 26.95 29.91 -169.99 -5.08 21.87 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H 0.07 1.05 5.08 -51.93 -0.26 0.79 16 21 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.08 1.20 5.15 -51.93 -0.27 0.93 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.81 7.20 -51.93 -0.37 0.43 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.70 7.27 -51.93 -0.38 0.32 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.58 8.12 -51.93 -0.42 1.16 16 31 H 0.26 7.78 6.57 -40.82 -0.27 7.51 16 LS Contribution 247.54 15.07 3.73 3.73 Total: -1.00 -33.60 247.54 -5.14 -38.74 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.99 Total: -1.91 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 0.14 Total: -0.41 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.34 Total: -40.73 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.27 Total: -21.29 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -5.08 Total: 21.87 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.60 -5.14 -38.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.476 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds