Wall clock time and date at job start Mon Mar 30 2020 03:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99942 * 2 1 4 4 N 1.34772 * 120.00027 * 180.02562 * 2 1 3 5 5 C 1.48181 * 118.51475 * 357.25927 * 4 2 1 6 6 C 1.54290 * 110.69932 * 138.79424 * 5 4 2 7 7 O 1.40533 * 109.86638 * 320.61752 * 6 5 4 8 8 C 1.42560 * 113.54151 * 95.28490 * 7 6 5 9 9 C 1.47682 * 113.66619 * 272.24549 * 8 7 6 10 10 C 1.44457 * 118.51747 * 177.27923 * 4 2 1 11 11 H 1.08998 * 109.51950 * 148.93749 * 10 4 2 12 12 C 1.50705 * 109.49159 * 28.87039 * 10 4 2 13 13 H 1.08002 * 119.99969 * 274.19814 * 12 10 4 14 14 C 1.37877 * 120.00028 * 94.19587 * 12 10 4 15 15 N 1.31513 * 120.00155 * 354.67933 * 14 12 10 16 16 Si 1.86803 * 119.99845 * 174.67872 * 14 12 10 17 17 H 1.48499 * 109.46757 * 90.00185 * 16 14 12 18 18 H 1.48493 * 109.47371 * 330.00372 * 16 14 12 19 19 H 1.48500 * 109.47005 * 210.00117 * 16 14 12 20 20 H 1.08994 * 109.46977 * 185.49764 * 1 2 3 21 21 H 1.09000 * 109.46790 * 305.49032 * 1 2 3 22 22 H 1.08992 * 109.46974 * 65.49368 * 1 2 3 23 23 H 1.09005 * 109.22965 * 18.48061 * 5 4 2 24 24 H 1.08997 * 109.23605 * 259.11206 * 5 4 2 25 25 H 1.08994 * 109.41308 * 200.49629 * 6 5 4 26 26 H 1.09000 * 109.33777 * 80.69018 * 6 5 4 27 27 H 1.09005 * 108.64114 * 151.16014 * 8 7 6 28 28 H 1.09004 * 108.53767 * 33.24858 * 8 7 6 29 29 H 1.09005 * 109.43587 * 300.73393 * 9 8 7 30 30 H 1.08997 * 109.43779 * 180.86985 * 9 8 7 31 31 H 0.97001 * 119.99926 * 4.93194 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4083 -2.4301 0.0612 6 6 2.0100 -3.4846 -0.8909 7 8 2.4193 -2.8702 -2.0867 8 6 3.8004 -2.5172 -2.1018 9 6 4.0764 -1.1791 -1.5410 10 6 3.6238 -1.1305 -0.0608 11 1 4.0325 -1.9884 0.4731 12 6 4.1214 0.1416 0.5758 13 1 4.1898 1.0472 -0.0088 14 6 4.4895 0.1495 1.9045 15 7 4.3084 -0.9233 2.6434 16 14 5.2453 1.6840 2.6553 17 1 4.1694 2.5474 3.2050 18 1 5.9930 2.4292 1.6110 19 1 6.1741 1.2950 3.7467 20 1 -0.3633 -1.0229 0.0985 21 1 -0.3633 0.5966 0.8368 22 1 -0.3633 0.4262 -0.9350 23 1 0.3756 -2.2337 -0.2272 24 1 1.4286 -2.8140 1.0811 25 1 1.2594 -4.2433 -1.1121 26 1 2.8696 -3.9541 -0.4125 27 1 4.1555 -2.5434 -3.1321 28 1 4.3538 -3.2579 -1.5245 29 1 3.5316 -0.4272 -2.1119 30 1 5.1454 -0.9744 -1.6004 31 1 3.9830 -1.7422 2.2379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259821572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:56 Heat of formation + Delta-G solvation = -85.558062 kcal Electronic energy + Delta-G solvation = -15489.120236 eV Core-core repulsion = 12963.545478 eV Total energy + Delta-G solvation = -2525.574758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.18453 -39.20357 -36.28494 -35.11756 -33.54966 -30.75298 -29.46574 -27.80400 -25.12562 -23.45816 -22.64004 -20.26712 -18.88051 -18.03953 -17.18852 -16.87239 -16.54329 -15.92220 -15.69975 -15.41709 -14.78340 -14.37881 -14.07391 -13.96576 -13.20338 -13.14602 -12.93570 -12.69477 -12.65150 -12.19216 -11.98131 -11.74092 -11.50710 -11.22857 -10.62636 -10.40432 -9.98548 -9.11354 -8.53287 -6.09177 1.47021 1.54098 1.74396 2.09338 2.44714 2.56921 2.97252 3.35969 3.90338 3.95296 4.04309 4.06873 4.28867 4.48169 4.54583 4.60801 4.64842 4.68238 4.70901 4.79332 4.89759 5.01745 5.12960 5.35431 5.88836 6.20006 6.33605 6.36557 6.69291 6.98036 7.48190 7.79972 8.85041 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.013290 C = 0.011536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.761901 B = 2106.363105 C = 2426.628127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.479 3.521 3 O -0.573 6.573 4 N -0.600 5.600 5 C 0.059 3.941 6 C 0.051 3.949 7 O -0.381 6.381 8 C 0.070 3.930 9 C -0.146 4.146 10 C 0.244 3.756 11 H 0.029 0.971 12 C -0.541 4.541 13 H 0.036 0.964 14 C -0.034 4.034 15 N -0.943 5.943 16 Si 1.109 2.891 17 H -0.292 1.292 18 H -0.278 1.278 19 H -0.277 1.277 20 H 0.104 0.896 21 H 0.085 0.915 22 H 0.098 0.902 23 H 0.113 0.887 24 H 0.061 0.939 25 H 0.130 0.870 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 -6.809 -6.739 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.268 3.732 3 O -0.452 6.452 4 N -0.333 5.333 5 C -0.064 4.064 6 C -0.027 4.027 7 O -0.299 6.299 8 C -0.007 4.007 9 C -0.185 4.185 10 C 0.143 3.857 11 H 0.047 0.953 12 C -0.581 4.581 13 H 0.055 0.945 14 C -0.231 4.231 15 N -0.583 5.583 16 Si 0.934 3.066 17 H -0.219 1.219 18 H -0.203 1.203 19 H -0.203 1.203 20 H 0.122 0.878 21 H 0.104 0.896 22 H 0.117 0.883 23 H 0.131 0.869 24 H 0.079 0.921 25 H 0.148 0.852 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.598 -5.620 -5.502 9.654 hybrid contribution -0.314 -0.451 -0.918 1.070 sum -5.912 -6.072 -6.420 10.632 Atomic orbital electron populations 1.22088 0.90501 1.05528 1.04858 1.21467 0.91475 0.83922 0.76348 1.90684 1.70954 1.33261 1.50333 1.48661 1.07294 1.05704 1.71665 1.23149 0.97744 0.85554 0.99913 1.23018 1.00568 0.94068 0.85013 1.87375 1.26552 1.79460 1.36528 1.21594 0.82057 0.94981 1.02020 1.21828 1.01009 0.98112 0.97584 1.18816 0.78218 0.96584 0.92114 0.95290 1.22184 1.41247 0.96179 0.98471 0.94536 1.26863 0.96142 1.05001 0.95060 1.70923 1.47303 1.02435 1.37686 0.82997 0.75939 0.72321 0.75319 1.21945 1.20306 1.20263 0.87761 0.89650 0.88332 0.86915 0.92105 0.85193 0.93146 0.88298 0.92809 0.94499 0.90896 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.44 10.00 71.24 0.71 -4.72 16 2 C 0.48 22.34 7.51 87.66 0.66 23.00 16 3 O -0.57 -32.87 13.72 -3.04 -0.04 -32.92 16 4 N -0.60 -26.52 2.52 -796.34 -2.01 -28.53 16 5 C 0.06 1.86 6.37 86.49 0.55 2.41 16 6 C 0.05 1.39 6.50 72.42 0.47 1.86 16 7 O -0.38 -12.36 10.23 -144.97 -1.48 -13.84 16 8 C 0.07 2.31 6.04 70.32 0.43 2.74 16 9 C -0.15 -6.25 5.33 29.57 0.16 -6.09 16 10 C 0.24 12.22 1.87 45.27 0.08 12.30 16 11 H 0.03 1.53 6.41 -2.39 -0.02 1.52 16 12 C -0.54 -32.03 5.69 25.60 0.15 -31.88 16 13 H 0.04 2.35 6.80 -2.91 -0.02 2.33 16 14 C -0.03 -2.00 5.45 84.65 0.46 -1.54 16 15 N -0.94 -57.85 13.63 21.45 0.29 -57.55 16 16 Si 1.11 55.48 29.91 68.60 2.05 57.53 16 17 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 20 H 0.10 2.58 5.08 -2.39 -0.01 2.57 16 21 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 22 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 23 H 0.11 2.83 5.15 -2.38 -0.01 2.82 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.05 1.41 7.20 -2.39 -0.02 1.39 16 27 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 28 H 0.05 1.67 7.27 -2.38 -0.02 1.65 16 29 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.07 3.08 8.12 -2.39 -0.02 3.06 16 31 H 0.26 15.43 6.57 -92.71 -0.61 14.82 16 Total: -1.00 -75.58 247.54 3.76 -71.82 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.28 Total: 5.42 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 3.67 Total: -1.92 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -1.72 Total: -86.09 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -1.52 Total: -46.76 kcal Atomic # 14 Polarization: 55.48 SS G_CDS: 2.05 Total: 57.53 kcal Total: -75.58 3.76 -71.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.736 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds