Wall clock time and date at job start Mon Mar 30 2020 03:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21275 * 119.99767 * 2 1 4 4 N 1.34775 * 119.99469 * 180.02562 * 2 1 3 5 5 C 1.47063 * 136.06381 * 0.04520 * 4 2 1 6 6 C 1.53498 * 87.98691 * 152.84720 * 5 4 2 7 7 C 1.47075 * 136.05029 * 180.02562 * 4 2 1 8 8 H 1.08995 * 113.46546 * 92.31777 * 7 4 2 9 9 C 1.52998 * 113.46785 * 321.93038 * 7 4 2 10 10 O 1.42897 * 109.46795 * 84.50813 * 9 7 4 11 11 C 1.42905 * 113.99899 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47179 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 H 1.08998 * 109.47206 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47063 * 299.99917 * 1 2 3 22 22 H 1.09001 * 109.47014 * 59.99958 * 1 2 3 23 23 H 1.09003 * 113.47000 * 267.62940 * 5 4 2 24 24 H 1.08997 * 113.46499 * 38.00859 * 5 4 2 25 25 H 1.08995 * 114.20837 * 272.47707 * 6 5 4 26 26 H 1.09004 * 114.20648 * 139.65527 * 6 5 4 27 27 H 1.08995 * 109.47274 * 324.50851 * 9 7 4 28 28 H 1.09002 * 109.46559 * 204.50315 * 9 7 4 29 29 H 1.09007 * 109.46810 * 59.99780 * 11 10 9 30 30 H 1.09003 * 109.46936 * 300.00543 * 11 10 9 31 31 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.8265 -2.5946 -0.0020 6 6 3.1647 -2.8705 -0.7014 7 6 3.5942 -1.5740 -0.0002 8 1 3.9997 -1.7336 0.9988 9 6 4.4856 -0.6802 -0.8647 10 8 4.8889 0.4636 -0.1090 11 6 5.7300 1.3681 -0.8278 12 6 6.0928 2.5302 0.0603 13 1 5.7190 2.5736 1.0726 14 6 6.9021 3.5382 -0.4195 15 7 7.3578 3.4851 -1.6521 16 14 7.3513 4.9790 0.6812 17 1 8.2254 5.9189 -0.0658 18 1 6.1142 5.6831 1.1045 19 1 8.0719 4.4803 1.8800 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.7614 -3.0267 0.9966 24 1 0.9578 -2.8255 -0.6184 25 1 3.1241 -2.7989 -1.7882 26 1 3.6796 -3.7628 -0.3451 27 1 3.9309 -0.3566 -1.7453 28 1 5.3679 -1.2395 -1.1761 29 1 5.2013 1.7341 -1.7081 30 1 6.6380 0.8511 -1.1383 31 1 7.9268 4.1944 -1.9897 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:46 Heat of formation + Delta-G solvation = -75.166170 kcal Electronic energy + Delta-G solvation = -14302.502047 eV Core-core repulsion = 11777.377915 eV Total energy + Delta-G solvation = -2525.124132 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.38211 -38.91067 -38.13763 -34.96617 -32.21543 -30.38000 -29.21556 -28.50814 -24.63620 -23.82856 -23.01405 -19.76482 -18.73619 -17.88404 -17.35151 -17.10145 -16.80675 -16.20367 -16.03464 -15.51042 -14.68345 -14.19917 -13.83810 -13.69146 -13.31753 -13.13795 -13.06390 -12.94423 -12.69021 -12.63396 -12.35288 -12.16964 -11.53641 -11.33731 -10.93571 -10.68526 -10.26061 -9.65294 -8.37108 -6.49828 1.32683 1.39888 1.48119 1.72579 1.99125 2.31129 2.95367 3.10859 3.50499 3.70824 4.02073 4.14693 4.29145 4.33784 4.50968 4.53502 4.63288 4.64858 4.68337 4.77631 4.91185 4.99367 5.08880 5.14969 5.35357 5.48448 5.91255 6.49132 6.77664 6.90622 7.21703 7.32037 8.75817 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042850 B = 0.007192 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.282148 B = 3892.500184 C = 4303.927739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.506 3.494 3 O -0.591 6.591 4 N -0.656 5.656 5 C 0.108 3.892 6 C -0.124 4.124 7 C 0.118 3.882 8 H 0.096 0.904 9 C 0.053 3.947 10 O -0.400 6.400 11 C 0.218 3.782 12 C -0.550 4.550 13 H 0.053 0.947 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.987 3.013 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.260 1.260 20 H 0.109 0.891 21 H 0.098 0.902 22 H 0.095 0.905 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.127 0.873 27 H 0.019 0.981 28 H 0.060 0.940 29 H -0.032 1.032 30 H -0.011 1.011 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.127 -16.156 2.422 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.297 3.703 3 O -0.470 6.470 4 N -0.393 5.393 5 C -0.013 4.013 6 C -0.162 4.162 7 C 0.014 3.986 8 H 0.114 0.886 9 C -0.025 4.025 10 O -0.320 6.320 11 C 0.143 3.857 12 C -0.588 4.588 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.809 3.191 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.185 1.185 20 H 0.128 0.872 21 H 0.117 0.883 22 H 0.114 0.886 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.116 0.884 26 H 0.145 0.855 27 H 0.038 0.962 28 H 0.078 0.922 29 H -0.015 1.015 30 H 0.007 0.993 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.904 -15.280 2.478 20.153 hybrid contribution 0.613 1.062 -0.137 1.234 sum -12.291 -14.218 2.341 18.940 Atomic orbital electron populations 1.21769 0.87274 1.06219 1.05454 1.21577 0.92071 0.81551 0.75076 1.90900 1.71985 1.32774 1.51344 1.50250 1.09016 1.07064 1.72983 1.23222 0.99130 0.76410 1.02508 1.23477 0.96452 0.95179 1.01055 1.23025 0.82580 0.93208 0.99804 0.88624 1.22766 0.97410 0.87878 0.94405 1.87888 1.69007 1.34396 1.40699 1.19680 0.86929 0.87838 0.91247 1.21317 1.31241 1.06529 0.99664 0.92884 1.26035 0.94809 1.01298 0.97185 1.70068 1.34693 1.35295 1.16987 0.85194 0.78421 0.77145 0.78361 1.19051 1.19643 1.18466 0.87207 0.88340 0.88612 0.87240 0.87234 0.88439 0.85475 0.96233 0.92163 1.01456 0.99330 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 10.36 71.24 0.74 -2.36 16 2 C 0.51 17.88 8.09 87.66 0.71 18.59 16 3 O -0.59 -30.45 16.52 4.96 0.08 -30.37 16 4 N -0.66 -18.91 3.57 -833.60 -2.97 -21.88 16 5 C 0.11 1.49 7.99 83.18 0.66 2.16 16 6 C -0.12 -1.97 8.03 30.94 0.25 -1.72 16 7 C 0.12 3.56 4.33 41.80 0.18 3.74 16 8 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 9 C 0.05 2.26 5.38 71.98 0.39 2.64 16 10 O -0.40 -22.98 9.46 -141.01 -1.33 -24.31 16 11 C 0.22 14.03 5.69 71.23 0.41 14.43 16 12 C -0.55 -36.93 9.43 25.60 0.24 -36.69 16 13 H 0.05 3.58 7.81 -2.91 -0.02 3.56 16 14 C 0.00 0.31 5.46 84.66 0.46 0.77 16 15 N -0.93 -60.27 13.29 21.45 0.28 -59.98 16 16 Si 0.99 48.31 29.54 68.60 2.03 50.33 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 20 H 0.11 1.35 7.31 -2.39 -0.02 1.33 16 21 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 22 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.11 0.87 7.95 -2.39 -0.02 0.85 16 25 H 0.10 1.55 8.12 -2.39 -0.02 1.54 16 26 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H -0.03 -2.23 8.14 -2.38 -0.02 -2.25 16 30 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -91.27 271.24 3.22 -88.05 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: 1.10 Total: -3.40 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 4.04 Total: 1.56 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -2.69 Total: -81.86 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -1.25 Total: -54.68 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.33 kcal Total: -91.27 3.22 -88.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.884 kcal (2) G-P(sol) polarization free energy of solvation -91.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds