Wall clock time and date at job start Mon Mar 30 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00521 * 2 1 4 4 N 1.34784 * 119.99774 * 180.27106 * 2 1 3 5 5 C 1.47026 * 125.64510 * 359.75247 * 4 2 1 6 6 C 1.54325 * 107.26644 * 181.02411 * 5 4 2 7 7 C 1.55159 * 102.94381 * 22.19183 * 6 5 4 8 8 H 1.08997 * 111.00351 * 82.57418 * 7 6 5 9 9 C 1.53000 * 110.99886 * 206.38729 * 7 6 5 10 10 O 1.42911 * 109.46655 * 185.00285 * 9 7 6 11 11 C 1.34925 * 116.99929 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99850 * 359.97438 * 11 10 9 13 13 C 1.38630 * 120.00061 * 180.02562 * 11 10 9 14 14 N 1.31579 * 120.00186 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00176 * 180.02562 * 13 11 10 16 16 H 1.48488 * 109.47302 * 89.99614 * 15 13 11 17 17 H 1.48497 * 109.46793 * 209.99986 * 15 13 11 18 18 H 1.48497 * 109.46731 * 329.99449 * 15 13 11 19 19 C 1.47420 * 125.64700 * 179.44394 * 4 2 1 20 20 H 1.08993 * 109.47525 * 239.72573 * 1 2 3 21 21 H 1.09006 * 109.46968 * 359.73136 * 1 2 3 22 22 H 1.09001 * 109.46809 * 119.72132 * 1 2 3 23 23 H 1.08999 * 109.88043 * 300.43842 * 5 4 2 24 24 H 1.08996 * 109.88131 * 61.44987 * 5 4 2 25 25 H 1.08995 * 110.71973 * 140.55926 * 6 5 4 26 26 H 1.09004 * 110.71929 * 263.65181 * 6 5 4 27 27 H 1.09005 * 109.47204 * 304.99622 * 9 7 6 28 28 H 1.08995 * 109.47620 * 65.00181 * 9 7 6 29 29 H 0.96995 * 120.00662 * 180.02562 * 14 13 11 30 30 H 1.08998 * 110.36863 * 274.74639 * 19 4 2 31 31 H 1.08994 * 110.36906 * 37.07186 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0055 5 6 1.5745 -2.5067 -0.0067 6 6 2.7280 -3.5317 0.0127 7 6 3.9106 -2.7131 0.5948 8 1 3.8657 -2.6819 1.6834 9 6 5.2523 -3.2747 0.1200 10 8 6.3172 -2.5730 0.7650 11 6 7.5752 -2.9493 0.4544 12 1 7.7407 -3.7484 -0.2531 13 6 8.6552 -2.3108 1.0441 14 7 8.4536 -1.3376 1.9064 15 14 10.3969 -2.8312 0.6136 16 1 10.8783 -2.0377 -0.5455 17 1 11.2864 -2.5949 1.7790 18 1 10.4103 -4.2746 0.2652 19 6 3.6478 -1.3124 -0.0178 20 1 -0.3634 -0.5180 0.8874 21 1 -0.3633 1.0277 0.0048 22 1 -0.3633 -0.5095 -0.8925 23 1 0.9519 -2.6325 0.8791 24 1 0.9720 -2.6400 -0.9052 25 1 2.4852 -4.3733 0.6614 26 1 2.9541 -3.8770 -0.9962 27 1 5.3116 -4.3341 0.3697 28 1 5.3367 -3.1505 -0.9595 29 1 9.2092 -0.8906 2.3187 30 1 4.0251 -1.2657 -1.0394 31 1 4.1108 -0.5383 0.5942 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260111852.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:49 Heat of formation + Delta-G solvation = -102.187080 kcal Electronic energy + Delta-G solvation = -14163.272711 eV Core-core repulsion = 11636.976864 eV Total energy + Delta-G solvation = -2526.295847 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04480 -39.00515 -37.76000 -34.22386 -33.22115 -30.73189 -30.12459 -27.16768 -25.86906 -23.79255 -21.45047 -20.34320 -19.56426 -18.01231 -17.77925 -17.04634 -16.50461 -15.87386 -15.78781 -15.29213 -14.69825 -14.35897 -13.90607 -13.80027 -13.48990 -13.28711 -13.03861 -12.97733 -12.80415 -12.28793 -12.20860 -11.90793 -11.74498 -11.39730 -11.21302 -10.98731 -10.16735 -9.71058 -8.18787 -5.89255 1.38760 1.46036 1.55187 1.58988 2.01744 2.32525 3.14386 3.34898 3.62700 3.71737 3.88965 4.20121 4.29932 4.46184 4.50816 4.52783 4.64670 4.66434 4.78215 4.79917 4.87809 4.98622 5.04905 5.15947 5.21177 5.25330 5.36594 6.19062 6.55929 7.11920 7.24156 8.05469 9.06487 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051374 B = 0.006404 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.895888 B = 4371.066800 C = 4777.082059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.506 3.494 3 O -0.614 6.614 4 N -0.622 5.622 5 C 0.101 3.899 6 C -0.112 4.112 7 C -0.089 4.089 8 H 0.073 0.927 9 C 0.077 3.923 10 O -0.341 6.341 11 C -0.378 4.378 12 H 0.077 0.923 13 C -0.046 4.046 14 N -0.943 5.943 15 Si 1.008 2.992 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.254 1.254 19 C 0.117 3.883 20 H 0.114 0.886 21 H 0.089 0.911 22 H 0.117 0.883 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.058 0.942 31 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.076 -6.862 -5.256 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.298 3.702 3 O -0.497 6.497 4 N -0.355 5.355 5 C -0.020 4.020 6 C -0.150 4.150 7 C -0.109 4.109 8 H 0.091 0.909 9 C 0.000 4.000 10 O -0.257 6.257 11 C -0.457 4.457 12 H 0.094 0.906 13 C -0.239 4.239 14 N -0.588 5.588 15 Si 0.829 3.171 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.178 1.178 19 C -0.007 4.007 20 H 0.132 0.868 21 H 0.108 0.892 22 H 0.136 0.864 23 H 0.115 0.885 24 H 0.122 0.878 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.813 -6.022 -5.039 18.556 hybrid contribution 1.322 0.140 -0.088 1.333 sum -15.490 -5.882 -5.127 17.345 Atomic orbital electron populations 1.21895 0.86335 1.06172 1.06696 1.21720 0.92697 0.81239 0.74556 1.90712 1.72622 1.33109 1.53215 1.48841 1.06739 1.07649 1.72311 1.22379 0.96131 0.78947 1.04576 1.22685 0.91432 0.97703 1.03176 1.22247 0.94266 0.93981 1.00363 0.90896 1.22317 0.87122 0.95219 0.95323 1.85589 1.13334 1.60126 1.66689 1.21364 0.82103 1.17725 1.24467 0.90577 1.26300 1.03623 0.96837 0.97094 1.70215 1.32010 1.25542 1.31028 0.84729 0.75718 0.78974 0.77637 1.19783 1.20493 1.17782 1.22042 0.81292 0.97685 0.99673 0.86810 0.89164 0.86416 0.88544 0.87752 0.87004 0.89139 0.93877 0.95109 0.93155 0.92418 0.94907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.51 71.24 0.68 -1.76 16 2 C 0.51 15.56 7.96 87.65 0.70 16.25 16 3 O -0.61 -26.65 17.34 -3.04 -0.05 -26.70 16 4 N -0.62 -18.19 3.32 -811.36 -2.70 -20.89 16 5 C 0.10 1.74 6.49 86.73 0.56 2.30 16 6 C -0.11 -2.29 6.41 31.78 0.20 -2.08 16 7 C -0.09 -3.09 3.31 -9.32 -0.03 -3.12 16 8 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 9 C 0.08 3.32 5.47 71.98 0.39 3.71 16 10 O -0.34 -20.26 9.75 -81.94 -0.80 -21.06 16 11 C -0.38 -22.75 9.89 67.91 0.67 -22.08 16 12 H 0.08 4.19 7.77 -2.91 -0.02 4.17 16 13 C -0.05 -2.78 5.49 84.82 0.47 -2.31 16 14 N -0.94 -62.37 13.67 21.61 0.30 -62.07 16 15 Si 1.01 46.00 29.55 68.60 2.03 48.02 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.25 -10.59 7.11 99.48 0.71 -9.89 16 19 C 0.12 4.50 6.35 86.93 0.55 5.06 16 20 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.09 1.48 8.12 -2.38 -0.02 1.46 16 22 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.65 8.04 -2.38 -0.02 1.63 16 27 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.03 1.27 7.96 -2.39 -0.02 1.25 16 29 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 30 H 0.06 2.28 7.91 -2.39 -0.02 2.27 16 31 H 0.03 1.58 8.03 -2.39 -0.02 1.56 16 Total: -1.00 -85.39 268.99 4.06 -81.33 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.10 Total: 5.40 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 4.19 Total: -4.03 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -2.40 Total: -82.96 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.85 Total: -47.76 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -85.39 4.06 -81.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111852.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.861 kcal (2) G-P(sol) polarization free energy of solvation -85.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds