Wall clock time and date at job start Mon Mar 30 2020 02:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47348 * 2 1 4 4 N 1.46500 * 109.47380 * 184.99194 * 3 2 1 5 5 C 1.33868 * 118.73019 * 265.03974 * 4 3 2 6 6 O 1.21286 * 118.83199 * 1.86322 * 5 4 3 7 7 C 1.50344 * 122.33348 * 181.83730 * 5 4 3 8 8 O 1.42959 * 109.81160 * 344.12586 * 7 5 4 9 9 C 1.43253 * 112.98919 * 49.59395 * 8 7 5 10 10 C 1.46092 * 118.72546 * 85.04071 * 4 3 2 11 11 H 1.09000 * 109.38214 * 281.80882 * 10 4 3 12 12 C 1.50697 * 109.41030 * 41.53615 * 10 4 3 13 13 H 1.08005 * 119.99741 * 5.91944 * 12 10 4 14 14 C 1.37879 * 120.00107 * 185.93007 * 12 10 4 15 15 N 1.31514 * 119.99743 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99910 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47000 * 89.99786 * 16 14 12 18 18 H 1.48502 * 109.46717 * 209.99602 * 16 14 12 19 19 H 1.48498 * 109.47014 * 329.99505 * 16 14 12 20 20 H 1.08999 * 109.47060 * 299.99679 * 1 2 3 21 21 H 1.08992 * 109.46979 * 60.00237 * 1 2 3 22 22 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46922 * 239.99406 * 2 1 3 24 24 H 1.09001 * 109.47229 * 120.00311 * 2 1 3 25 25 H 1.09003 * 109.47474 * 64.98640 * 3 2 1 26 26 H 1.09008 * 109.46715 * 304.99112 * 3 2 1 27 27 H 1.09002 * 109.41407 * 224.01800 * 7 5 4 28 28 H 1.09000 * 109.35810 * 104.19476 * 7 5 4 29 29 H 1.08998 * 109.59526 * 51.39449 * 9 8 7 30 30 H 1.09003 * 109.60606 * 171.87874 * 9 8 7 31 31 H 0.97003 * 119.99797 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5001 1.4442 -0.1202 5 6 4.2375 1.5125 0.9950 6 8 3.6736 1.5361 2.0685 7 6 5.7399 1.5604 0.9640 8 8 6.2110 1.1564 -0.3239 9 6 5.5521 1.8359 -1.3992 10 6 4.0951 1.3713 -1.4525 11 1 4.0561 0.3425 -1.8103 12 6 3.3218 2.2567 -2.3954 13 1 2.5327 2.8897 -2.0169 14 6 3.6214 2.2586 -3.7412 15 7 4.5824 1.4880 -4.2020 16 14 2.6623 3.3556 -4.9100 17 1 3.3335 4.6763 -5.0123 18 1 2.6092 2.7221 -6.2521 19 1 1.2818 3.5404 -4.3949 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.7515 1.9299 0.9313 26 1 1.6055 1.9814 -0.8420 27 1 6.1396 0.8882 1.7233 28 1 6.0732 2.5777 1.1690 29 1 5.5869 2.9117 -1.2276 30 1 6.0469 1.5971 -2.3406 31 1 4.7934 1.4896 -5.1488 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260646239.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:17 Heat of formation + Delta-G solvation = -105.196122 kcal Electronic energy + Delta-G solvation = -15007.337495 eV Core-core repulsion = 12480.911167 eV Total energy + Delta-G solvation = -2526.426328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.52269 -38.56083 -37.22212 -35.09405 -33.70362 -30.81202 -29.04086 -27.59016 -25.58991 -23.99595 -22.57160 -19.77541 -18.65298 -18.51009 -17.91722 -16.62146 -16.25874 -16.13207 -15.59732 -15.54883 -15.20141 -14.46710 -14.20133 -13.84312 -13.22420 -12.95766 -12.92147 -12.79547 -12.54176 -12.37239 -12.20852 -11.98434 -11.56442 -11.44618 -11.30764 -10.74890 -10.18982 -9.50728 -8.25420 -6.40210 1.44078 1.46557 1.53962 1.56823 2.14229 2.38497 2.98308 3.13754 3.56014 4.08400 4.13515 4.24908 4.36047 4.38179 4.47321 4.58839 4.70269 4.77860 4.96826 5.13198 5.19605 5.23723 5.30706 5.32782 5.55299 5.57214 5.80846 6.21583 6.60329 6.74119 7.12365 7.33061 8.81375 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.013385 C = 0.009569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.559604 B = 2091.336544 C = 2925.466383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.107 3.893 4 N -0.586 5.586 5 C 0.469 3.531 6 O -0.599 6.599 7 C 0.052 3.948 8 O -0.395 6.395 9 C 0.065 3.935 10 C 0.244 3.756 11 H 0.015 0.985 12 C -0.547 4.547 13 H 0.069 0.931 14 C 0.030 3.970 15 N -0.911 5.911 16 Si 0.963 3.037 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.268 1.268 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 0.457 3.923 4.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C -0.015 4.015 4 N -0.315 5.315 5 C 0.258 3.742 6 O -0.483 6.483 7 C -0.027 4.027 8 O -0.314 6.314 9 C -0.012 4.012 10 C 0.142 3.858 11 H 0.033 0.967 12 C -0.585 4.585 13 H 0.087 0.913 14 C -0.172 4.172 15 N -0.548 5.548 16 Si 0.788 3.212 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.192 1.192 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.161 0.839 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.241 0.272 4.220 4.786 hybrid contribution -0.447 0.550 -0.844 1.102 sum -2.687 0.822 3.376 4.393 Atomic orbital electron populations 1.21623 0.93048 1.02582 1.02280 1.21696 0.97867 0.96338 1.00610 1.21582 0.79893 0.97831 1.02198 1.47997 1.07611 1.68691 1.07169 1.21577 0.92548 0.76368 0.83693 1.90602 1.73763 1.54267 1.29658 1.22852 0.87854 1.04308 0.87660 1.88082 1.62756 1.66156 1.14424 1.23148 0.93253 0.94998 0.89756 1.19211 0.91351 0.96737 0.78465 0.96681 1.21384 1.19624 1.25104 0.92367 0.91295 1.25635 0.95807 0.96401 0.99348 1.69969 1.30454 1.38812 1.15575 0.85466 0.79176 0.78674 0.77866 1.19960 1.20827 1.19206 0.91945 0.92247 0.91305 0.93331 0.93444 0.91294 0.89625 0.83901 0.88044 0.93468 0.87273 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.10 16 2 C -0.13 -4.53 6.25 30.59 0.19 -4.34 16 3 C 0.11 4.30 5.08 86.38 0.44 4.74 16 4 N -0.59 -25.77 2.71 -804.75 -2.18 -27.95 16 5 C 0.47 19.79 7.59 87.69 0.67 20.45 16 6 O -0.60 -27.13 16.31 -3.05 -0.05 -27.18 16 7 C 0.05 1.83 6.98 71.12 0.50 2.33 16 8 O -0.40 -16.15 10.85 -148.98 -1.62 -17.76 16 9 C 0.07 2.92 5.88 71.99 0.42 3.35 16 10 C 0.24 11.69 2.87 44.33 0.13 11.82 16 11 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 12 C -0.55 -27.09 7.77 25.60 0.20 -26.89 16 13 H 0.07 3.38 6.15 -2.91 -0.02 3.36 16 14 C 0.03 1.48 5.33 84.66 0.45 1.93 16 15 N -0.91 -47.24 11.86 21.45 0.25 -46.99 16 16 Si 0.96 39.52 29.54 68.60 2.03 41.54 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 20 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 2.74 7.14 -2.39 -0.02 2.72 16 26 H 0.09 3.49 5.70 -2.38 -0.01 3.48 16 27 H 0.14 4.19 8.14 -2.39 -0.02 4.17 16 28 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.05 2.05 8.06 -2.39 -0.02 2.03 16 30 H 0.11 5.29 6.82 -2.39 -0.02 5.27 16 31 H 0.27 13.35 8.31 -92.71 -0.77 12.57 16 Total: -1.00 -56.57 257.59 3.25 -53.32 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.11 Total: 14.72 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 3.71 Total: 10.29 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.93 Total: -74.94 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.67 Total: -44.94 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Total: -56.57 3.25 -53.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646239.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.875 kcal (2) G-P(sol) polarization free energy of solvation -56.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds