Wall clock time and date at job start Mon Mar 30 2020 02:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47120 * 2 1 4 4 N 1.46497 * 109.47554 * 120.00273 * 2 1 3 5 5 C 1.34008 * 125.55566 * 299.95875 * 4 2 1 6 6 O 1.21502 * 123.07186 * 0.02562 * 5 4 2 7 7 O 1.33772 * 113.85407 * 180.02562 * 5 4 2 8 8 C 1.45701 * 109.48032 * 359.97438 * 7 5 4 9 9 C 1.47092 * 125.56508 * 119.99800 * 4 2 1 10 10 C 1.52997 * 110.56422 * 298.54361 * 9 4 2 11 11 C 1.50703 * 110.56118 * 61.24286 * 9 4 2 12 12 H 1.07997 * 120.00325 * 355.38962 * 11 9 4 13 13 C 1.37884 * 119.99699 * 175.38707 * 11 9 4 14 14 N 1.31517 * 119.99739 * 188.88153 * 13 11 9 15 15 Si 1.86797 * 120.00135 * 8.88073 * 13 11 9 16 16 H 1.48500 * 109.46864 * 84.80753 * 15 13 11 17 17 H 1.48500 * 109.46991 * 204.80443 * 15 13 11 18 18 H 1.48498 * 109.47062 * 324.80652 * 15 13 11 19 19 H 1.09002 * 109.47237 * 299.99876 * 1 2 3 20 20 H 1.09002 * 109.47646 * 60.00046 * 1 2 3 21 21 H 1.09004 * 109.46794 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47237 * 240.00124 * 2 1 3 23 23 H 1.09002 * 109.46964 * 59.99956 * 3 2 1 24 24 H 1.09005 * 109.47371 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47329 * 300.00435 * 3 2 1 26 26 H 1.08996 * 110.52392 * 241.37196 * 8 7 5 27 27 H 1.09007 * 110.52093 * 118.62550 * 8 7 5 28 28 H 1.08999 * 109.47724 * 59.99301 * 10 9 4 29 29 H 1.08999 * 109.47190 * 179.97438 * 10 9 4 30 30 H 1.09008 * 109.46755 * 299.99314 * 10 9 4 31 31 H 0.96998 * 120.00098 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7649 -0.3308 2.4618 6 8 1.0842 0.6324 2.7536 7 8 2.3298 -1.1290 3.3746 8 6 3.0751 -2.1850 2.7021 9 6 2.8676 -1.8916 1.2037 10 6 2.1525 -3.0598 0.5221 11 6 4.1852 -1.6124 0.5275 12 1 4.3589 -0.6559 0.0573 13 6 5.1690 -2.5784 0.5093 14 7 6.3750 -2.2806 0.0774 15 14 4.7889 -4.3099 1.0981 16 1 4.1936 -5.0918 -0.0153 17 1 6.0426 -4.9659 1.5487 18 1 3.8282 -4.2485 2.2288 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 2.6693 -3.1631 2.9604 27 1 4.1330 -2.1290 2.9588 28 1 1.9250 -2.7942 -0.5103 29 1 2.7967 -3.9389 0.5372 30 1 1.2262 -3.2786 1.0534 31 1 7.0672 -2.9599 0.0649 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260650243.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:28 Heat of formation + Delta-G solvation = -82.231343 kcal Electronic energy + Delta-G solvation = -15478.548370 eV Core-core repulsion = 12953.117869 eV Total energy + Delta-G solvation = -2525.430501 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.57009 -38.39900 -37.70542 -35.39115 -33.67416 -31.41307 -28.20430 -27.70346 -27.06073 -24.24356 -22.77748 -20.94766 -18.95303 -17.97468 -17.67150 -17.09550 -16.66593 -16.15774 -15.25750 -15.06518 -14.68739 -14.36033 -14.32171 -14.01665 -13.87324 -13.34591 -12.92272 -12.84489 -12.54510 -12.35760 -12.26907 -12.20235 -11.64344 -11.47227 -11.28113 -11.00528 -10.77903 -9.66051 -8.37330 -6.47310 1.31193 1.35355 1.49227 1.70482 1.85134 2.26470 2.71670 2.92689 3.67120 3.79031 4.06102 4.23146 4.31954 4.37810 4.49210 4.55772 4.67087 4.75608 4.79939 4.86939 4.94838 5.05882 5.20008 5.34384 5.37250 5.42721 5.79671 6.13062 6.54716 6.63944 7.11731 7.23303 8.77950 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036114 B = 0.013347 C = 0.012192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.142172 B = 2097.379565 C = 2296.096122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 C -0.159 4.159 4 N -0.597 5.597 5 C 0.635 3.365 6 O -0.574 6.574 7 O -0.353 6.353 8 C 0.034 3.966 9 C 0.219 3.781 10 C -0.149 4.149 11 C -0.529 4.529 12 H 0.042 0.958 13 C 0.029 3.971 14 N -0.931 5.931 15 Si 0.930 3.070 16 H -0.260 1.260 17 H -0.302 1.302 18 H -0.216 1.216 19 H 0.049 0.951 20 H 0.095 0.905 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.049 0.951 24 H 0.035 0.965 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.024 -3.237 -0.815 9.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.066 3.934 3 C -0.217 4.217 4 N -0.341 5.341 5 C 0.390 3.610 6 O -0.465 6.465 7 O -0.264 6.264 8 C -0.040 4.040 9 C 0.133 3.867 10 C -0.206 4.206 11 C -0.567 4.567 12 H 0.060 0.940 13 C -0.171 4.171 14 N -0.568 5.568 15 Si 0.755 3.245 16 H -0.186 1.186 17 H -0.230 1.230 18 H -0.140 1.140 19 H 0.068 0.932 20 H 0.113 0.887 21 H 0.082 0.918 22 H 0.117 0.883 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.191 -2.789 -0.497 9.617 hybrid contribution 0.826 -0.540 0.019 0.987 sum -8.365 -3.329 -0.478 9.015 Atomic orbital electron populations 1.22136 0.93136 1.02763 1.03266 1.20951 0.94821 0.92428 0.85172 1.22122 1.00317 0.96195 1.03043 1.48311 1.50958 1.29888 1.04934 1.18634 0.79131 0.82079 0.81166 1.90861 1.44074 1.28232 1.83327 1.87082 1.63803 1.41241 1.34256 1.25530 0.97079 0.89302 0.92130 1.19746 0.90184 0.84204 0.92541 1.22330 0.99599 0.96510 1.02201 1.20960 0.96820 1.01464 1.37453 0.93971 1.25753 0.93830 1.03062 0.94477 1.70027 1.03273 1.35972 1.47517 0.86358 0.77816 0.79212 0.81067 1.18551 1.22997 1.13991 0.93201 0.88667 0.91837 0.88296 0.93153 0.94568 0.88671 0.86058 0.88774 0.90879 0.92468 0.91205 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 9.21 71.98 0.66 -3.70 16 2 C 0.17 5.75 3.02 44.99 0.14 5.89 16 3 C -0.16 -5.47 9.21 71.98 0.66 -4.80 16 4 N -0.60 -24.27 2.29 -884.77 -2.03 -26.30 16 5 C 0.64 28.42 8.31 129.91 1.08 29.50 16 6 O -0.57 -27.51 15.05 19.68 0.30 -27.21 16 7 O -0.35 -15.34 11.09 -47.32 -0.52 -15.86 16 8 C 0.03 1.32 5.53 72.35 0.40 1.72 16 9 C 0.22 8.98 0.75 3.11 0.00 8.98 16 10 C -0.15 -5.05 8.03 71.98 0.58 -4.47 16 11 C -0.53 -26.61 8.63 25.60 0.22 -26.39 16 12 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 13 C 0.03 1.49 5.23 84.66 0.44 1.93 16 14 N -0.93 -52.72 13.96 21.45 0.30 -52.42 16 15 Si 0.93 36.71 23.25 68.60 1.60 38.30 16 16 H -0.26 -9.71 6.92 99.48 0.69 -9.02 16 17 H -0.30 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.22 -7.11 4.36 99.48 0.43 -6.68 16 19 H 0.05 1.62 6.81 -2.39 -0.02 1.61 16 20 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.10 3.32 7.77 -2.39 -0.02 3.30 16 23 H 0.05 1.89 6.80 -2.39 -0.02 1.88 16 24 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.12 3.91 6.31 -2.39 -0.02 3.89 16 27 H 0.09 3.86 6.87 -2.38 -0.02 3.84 16 28 H 0.07 2.37 7.76 -2.39 -0.02 2.35 16 29 H 0.06 1.93 3.00 -2.39 -0.01 1.93 16 30 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.27 14.41 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -62.50 244.35 4.65 -57.85 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.83 Total: 16.97 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.19 Total: 8.67 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.73 Total: -78.71 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.23 Total: -43.07 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 1.60 Total: 38.30 kcal Total: -62.50 4.65 -57.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650243.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.379 kcal (2) G-P(sol) polarization free energy of solvation -62.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds