Wall clock time and date at job start Mon Mar 30 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46059 * 118.52117 * 119.99722 * 12 2 1 14 14 C 1.53140 * 109.91136 * 160.55843 * 13 12 2 15 15 H 1.09000 * 109.68538 * 288.26226 * 14 13 12 16 16 C 1.53001 * 109.68538 * 167.73446 * 14 13 12 17 17 C 1.53488 * 108.36199 * 47.98174 * 14 13 12 18 18 O 1.45426 * 108.10758 * 298.26698 * 17 14 13 19 19 C 1.33735 * 118.52004 * 299.73475 * 12 2 1 20 20 O 1.21507 * 118.46102 * 2.26535 * 19 12 2 21 21 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.40216 * 280.69227 * 13 12 2 26 26 H 1.09000 * 109.39431 * 40.42993 * 13 12 2 27 27 H 1.09007 * 109.46687 * 60.00002 * 16 14 13 28 28 H 1.09003 * 109.47060 * 179.97438 * 16 14 13 29 29 H 1.08997 * 109.47109 * 300.00063 * 16 14 13 30 30 H 1.08997 * 109.73661 * 57.92406 * 17 14 13 31 31 H 1.09003 * 109.73256 * 178.61877 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.8557 0.0503 -2.1361 14 6 3.6381 -0.9261 -3.0191 15 1 4.4175 -1.4098 -2.4303 16 6 4.2706 -0.1696 -4.1890 17 6 2.6622 -1.9834 -3.5532 18 8 2.1091 -2.7031 -2.4169 19 6 1.6817 -1.9722 -1.3758 20 8 0.9504 -2.4986 -0.5605 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 0.7089 1.1611 3.4845 25 1 2.2255 0.6805 -2.7636 26 1 3.5546 0.6769 -1.5820 27 1 4.9483 0.5929 -3.8047 28 1 4.8268 -0.8676 -4.8148 29 1 3.4877 0.3049 -4.7806 30 1 1.8592 -1.4969 -4.1070 31 1 3.1922 -2.6773 -4.2057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261021612.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:29 Heat of formation + Delta-G solvation = -77.420637 kcal Electronic energy + Delta-G solvation = -15073.584624 eV Core-core repulsion = 12548.362731 eV Total energy + Delta-G solvation = -2525.221893 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.29878 -36.78870 -35.85018 -33.61019 -32.26054 -29.13601 -26.56956 -25.64294 -25.06919 -22.75969 -20.53140 -18.99020 -17.41276 -16.35616 -15.92965 -15.26037 -14.79102 -14.47651 -13.92478 -13.47630 -13.30276 -12.78170 -12.42956 -12.31470 -11.95681 -11.24493 -11.15301 -10.99081 -10.84911 -10.73089 -10.45004 -10.26571 -10.11542 -9.82709 -9.35746 -8.82583 -8.30588 -7.68813 -5.96780 -3.99564 3.36443 3.39075 3.41811 3.48212 3.75357 4.15717 4.51947 4.66690 4.72041 5.02225 5.23348 5.35301 5.39612 5.54662 5.59576 5.73613 5.93501 6.00827 6.18896 6.48551 6.90074 7.07199 7.16146 7.40643 7.76644 7.92104 8.12530 8.31186 8.80277 8.96988 9.19308 9.64266 11.09199 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040772 B = 0.009730 C = 0.009500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.582146 B = 2876.946625 C = 2946.681273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.279 3.721 3 H 0.047 0.953 4 C -0.501 4.501 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.279 1.279 12 N -0.608 5.608 13 C 0.114 3.886 14 C -0.147 4.147 15 H 0.090 0.910 16 C -0.139 4.139 17 C 0.068 3.932 18 O -0.362 6.362 19 C 0.643 3.357 20 O -0.510 6.510 21 H 0.057 0.943 22 H 0.091 0.909 23 H 0.003 0.997 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 0.473 -12.564 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.180 3.820 3 H 0.064 0.936 4 C -0.540 4.540 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.205 1.205 12 N -0.353 5.353 13 C -0.010 4.010 14 C -0.166 4.166 15 H 0.108 0.892 16 C -0.196 4.196 17 C -0.007 4.007 18 O -0.275 6.275 19 C 0.395 3.605 20 O -0.393 6.393 21 H 0.076 0.924 22 H 0.110 0.890 23 H 0.022 0.978 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.159 0.054 -12.059 13.117 hybrid contribution 0.470 -0.189 0.717 0.878 sum 5.630 -0.135 -11.342 12.663 Atomic orbital electron populations 1.22198 0.97789 1.01722 0.99890 1.18846 0.91748 0.91691 0.79722 0.93573 1.21234 1.30743 1.12044 0.90004 0.92465 1.24832 0.95196 0.95093 0.98865 1.69859 1.37139 1.23113 1.23644 0.86532 0.78864 0.80041 0.81837 1.21316 1.20123 1.20461 1.47815 1.51651 1.09867 1.25992 1.21504 0.93753 0.94179 0.91523 1.22119 0.98727 0.97445 0.98303 0.89177 1.21649 1.00827 1.00291 0.96871 1.23344 0.96057 0.94638 0.86698 1.86669 1.76248 1.37650 1.26923 1.17860 0.80376 0.81196 0.81037 1.90968 1.36880 1.70015 1.41468 0.92414 0.89040 0.97828 0.92864 0.92313 0.90121 0.91635 0.92054 0.92149 0.91332 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 8.87 37.16 0.33 -3.77 16 2 C 0.28 7.19 2.62 -69.09 -0.18 7.01 16 3 H 0.05 1.20 7.83 -51.93 -0.41 0.79 16 4 C -0.50 -14.43 7.46 -34.44 -0.26 -14.69 16 5 H 0.06 1.72 7.42 -52.49 -0.39 1.33 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.90 -25.93 11.32 55.43 0.63 -25.30 16 8 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.61 -13.36 2.79 -173.93 -0.49 -13.85 16 13 C 0.11 1.83 5.71 -4.21 -0.02 1.80 16 14 C -0.15 -1.86 3.03 -90.29 -0.27 -2.13 16 15 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 16 C -0.14 -1.20 9.19 37.16 0.34 -0.86 16 17 C 0.07 0.90 6.51 37.41 0.24 1.15 16 18 O -0.36 -7.17 10.49 -39.23 -0.41 -7.58 16 19 C 0.64 15.18 7.57 53.59 0.41 15.59 16 20 O -0.51 -14.32 13.71 -19.40 -0.27 -14.59 16 21 H 0.06 1.60 5.91 -51.93 -0.31 1.30 16 22 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 23 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 26 H 0.08 1.26 8.06 -51.93 -0.42 0.85 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 254.13 15.07 3.83 3.83 Total: -1.00 -32.91 254.13 -5.59 -38.50 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.35 Total: -4.20 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 0.49 Total: 5.74 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.14 Total: -39.15 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.68 Total: -22.17 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.91 -5.59 -38.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021612.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.925 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds