Wall clock time and date at job start Mon Mar 30 2020 02:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52240 * 1 3 3 H 1.10089 * 108.56291 * 2 1 4 4 C 1.53235 * 111.15211 * 241.29443 * 2 1 3 5 5 O 1.41639 * 110.78244 * 311.19798 * 4 2 1 6 6 C 1.41834 * 118.32905 * 287.79419 * 5 4 2 7 7 C 1.53070 * 110.16860 * 80.63286 * 6 5 4 8 8 C 1.50813 * 109.37460 * 280.14437 * 7 6 5 9 9 O 1.22301 * 118.30602 * 229.23567 * 8 7 6 10 10 N 1.33729 * 123.85702 * 46.79051 * 8 7 6 11 11 C 1.47225 * 118.42156 * 202.42949 * 10 8 7 12 12 C 1.50703 * 109.46946 * 270.15531 * 11 10 8 13 13 H 1.08001 * 120.00056 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00145 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00222 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00041 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46926 * 89.99879 * 16 14 12 18 18 H 1.48495 * 109.47270 * 209.99888 * 16 14 12 19 19 H 1.48503 * 109.46935 * 330.00281 * 16 14 12 20 20 H 1.09002 * 109.47467 * 178.70715 * 1 2 3 21 21 H 1.09006 * 109.47369 * 298.70625 * 1 2 3 22 22 H 1.08997 * 109.47476 * 58.70331 * 1 2 3 23 23 H 1.09012 * 109.18338 * 71.61889 * 4 2 1 24 24 H 1.09043 * 109.19682 * 190.86727 * 4 2 1 25 25 H 1.08991 * 109.29034 * 320.33054 * 6 5 4 26 26 H 1.09015 * 109.21664 * 200.79713 * 6 5 4 27 27 H 1.09807 * 108.72846 * 161.19589 * 7 6 5 28 28 H 1.08680 * 110.36815 * 42.75535 * 7 6 5 29 29 H 1.08997 * 109.47016 * 30.15060 * 11 10 8 30 30 H 1.09000 * 109.47568 * 150.15819 * 11 10 8 31 31 H 0.97001 * 120.00186 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5224 0.0000 0.0000 3 1 1.8729 1.0436 0.0000 4 6 2.0753 -0.6864 -1.2535 5 8 1.4432 -1.9366 -1.4620 6 6 1.7652 -3.0075 -0.5895 7 6 0.9785 -2.8783 0.7172 8 6 1.6526 -1.8659 1.6090 9 8 1.8705 -2.1722 2.7728 10 7 2.0705 -0.6663 1.1912 11 6 3.1230 0.0165 1.9616 12 6 2.4898 0.8715 3.0289 13 1 1.4147 0.9051 3.1267 14 6 3.2829 1.6101 3.8813 15 7 2.7303 2.3558 4.8130 16 14 5.1424 1.5504 3.7136 17 1 5.5893 2.6129 2.7773 18 1 5.7666 1.7677 5.0433 19 1 5.5495 0.2230 3.1866 20 1 -0.3634 -1.0274 -0.0232 21 1 -0.3634 0.4936 0.9014 22 1 -0.3634 0.5338 -0.8781 23 1 1.9018 -0.0462 -2.1185 24 1 3.1479 -0.8420 -1.1334 25 1 2.8333 -2.9875 -0.3738 26 1 1.5126 -3.9518 -1.0720 27 1 0.9725 -3.8529 1.2230 28 1 -0.0512 -2.5972 0.5126 29 1 3.7714 -0.7254 2.4276 30 1 3.7118 0.6456 1.2941 31 1 3.2883 2.8757 5.4125 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261057202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:52 Heat of formation + Delta-G solvation = -74.073685 kcal Electronic energy + Delta-G solvation = -15109.400986 eV Core-core repulsion = 12584.324228 eV Total energy + Delta-G solvation = -2525.076758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.94832 -37.44876 -35.16487 -32.71399 -31.68330 -30.75731 -27.46392 -26.28938 -24.32535 -22.06439 -21.23066 -18.16404 -16.92698 -16.69223 -16.39089 -16.12269 -15.04081 -14.30452 -14.03547 -13.85743 -13.34556 -12.94249 -12.51286 -12.22125 -11.98900 -11.66276 -11.51124 -11.37210 -11.27215 -10.74558 -10.51580 -10.34809 -10.08532 -9.71790 -9.42722 -8.91675 -8.57181 -7.70094 -6.05632 -4.03237 3.22102 3.26036 3.34313 3.37052 3.70755 3.81564 4.40357 4.83022 5.08047 5.16549 5.21111 5.26853 5.30681 5.32495 5.62982 5.71415 5.77467 5.86066 6.00223 6.07746 6.30481 6.51971 6.64440 6.91852 7.29329 7.42595 7.62794 8.32310 8.50382 8.93484 9.00736 9.54138 11.08134 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040196 B = 0.010107 C = 0.009866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.418565 B = 2769.624416 C = 2837.209535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.108 3.892 3 H 0.099 0.901 4 C 0.055 3.945 5 O -0.387 6.387 6 C 0.076 3.924 7 C -0.171 4.171 8 C 0.501 3.499 9 O -0.540 6.540 10 N -0.595 5.595 11 C 0.218 3.782 12 C -0.519 4.519 13 H 0.075 0.925 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.874 3.126 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.266 1.266 20 H 0.062 0.938 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.101 0.899 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.035 0.965 30 H 0.024 0.976 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.384 -6.866 -13.984 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.003 3.997 3 H 0.117 0.883 4 C -0.023 4.023 5 O -0.306 6.306 6 C -0.001 4.001 7 C -0.212 4.212 8 C 0.288 3.712 9 O -0.418 6.418 10 N -0.327 5.327 11 C 0.098 3.902 12 C -0.558 4.558 13 H 0.093 0.907 14 C -0.132 4.132 15 N -0.537 5.537 16 Si 0.701 3.299 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.191 1.191 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.119 0.881 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.331 -6.922 -13.352 15.099 hybrid contribution 1.113 0.249 0.392 1.206 sum -0.218 -6.674 -12.960 14.579 Atomic orbital electron populations 1.21912 0.94264 1.02768 1.02504 1.21834 0.94999 0.98074 0.84751 0.88301 1.23036 0.96396 0.84878 0.98011 1.87045 1.69138 1.19420 1.54980 1.22328 0.98380 0.90063 0.89323 1.22659 1.01745 0.99838 0.96945 1.20521 0.79761 0.82744 0.88142 1.90991 1.54674 1.78538 1.17577 1.47928 1.39813 1.17561 1.27446 1.19828 0.86167 0.92756 0.91444 1.21293 0.95686 1.24697 1.14113 0.90724 1.24879 0.98443 0.95015 0.94883 1.69899 1.35512 1.29120 1.19190 0.86877 0.86277 0.78808 0.77901 1.20140 1.20940 1.19087 0.91870 0.91653 0.91556 0.88086 0.92923 0.92973 0.88458 0.88253 0.88105 0.94718 0.95791 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.88 36.77 0.33 -1.99 16 2 C 0.11 1.75 2.91 -67.88 -0.20 1.55 16 3 H 0.10 1.62 7.85 -51.31 -0.40 1.22 16 4 C 0.05 0.71 6.24 37.28 0.23 0.94 16 5 O -0.39 -5.13 9.42 -35.18 -0.33 -5.46 16 6 C 0.08 0.95 6.49 37.19 0.24 1.20 16 7 C -0.17 -2.55 5.36 -27.79 -0.15 -2.70 16 8 C 0.50 10.51 6.42 -11.40 -0.07 10.44 16 9 O -0.54 -14.13 16.53 4.64 0.08 -14.05 16 10 N -0.59 -12.39 2.38 -166.31 -0.40 -12.79 16 11 C 0.22 5.37 3.88 -4.80 -0.02 5.35 16 12 C -0.52 -15.19 9.80 -34.44 -0.34 -15.53 16 13 H 0.07 2.43 8.06 -52.49 -0.42 2.00 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 16 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 20 H 0.06 0.90 4.73 -51.93 -0.25 0.66 16 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 24 H 0.05 0.70 8.01 -51.90 -0.42 0.28 16 25 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 26 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.10 1.35 8.16 -51.47 -0.42 0.93 16 28 H 0.10 1.38 6.01 -52.11 -0.31 1.07 16 29 H 0.03 0.92 6.66 -51.93 -0.35 0.57 16 30 H 0.02 0.55 7.38 -51.93 -0.38 0.16 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 251.50 15.07 3.79 3.79 Total: -1.00 -34.68 251.50 -5.04 -39.72 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -4.21 Total: -2.04 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.07 Total: 1.22 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.38 Total: -40.17 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.25 Total: -19.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -34.68 -5.04 -39.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.359 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds