Wall clock time and date at job start Mon Mar 30 2020 02:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52240 * 1 3 3 H 1.10089 * 108.56291 * 2 1 4 4 C 1.53235 * 111.15211 * 241.29443 * 2 1 3 5 5 O 1.41639 * 110.78244 * 311.19798 * 4 2 1 6 6 C 1.41834 * 118.32905 * 287.79419 * 5 4 2 7 7 C 1.53070 * 110.16860 * 80.63286 * 6 5 4 8 8 C 1.50813 * 109.37460 * 280.14437 * 7 6 5 9 9 O 1.22301 * 118.30602 * 229.23567 * 8 7 6 10 10 N 1.33729 * 123.85702 * 46.79051 * 8 7 6 11 11 C 1.47225 * 118.42156 * 202.42949 * 10 8 7 12 12 C 1.50703 * 109.46946 * 270.15531 * 11 10 8 13 13 H 1.08001 * 120.00056 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00145 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00222 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00041 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46926 * 89.99879 * 16 14 12 18 18 H 1.48495 * 109.47270 * 209.99888 * 16 14 12 19 19 H 1.48503 * 109.46935 * 330.00281 * 16 14 12 20 20 H 1.09002 * 109.47467 * 178.70715 * 1 2 3 21 21 H 1.09006 * 109.47369 * 298.70625 * 1 2 3 22 22 H 1.08997 * 109.47476 * 58.70331 * 1 2 3 23 23 H 1.09012 * 109.18338 * 71.61889 * 4 2 1 24 24 H 1.09043 * 109.19682 * 190.86727 * 4 2 1 25 25 H 1.08991 * 109.29034 * 320.33054 * 6 5 4 26 26 H 1.09015 * 109.21664 * 200.79713 * 6 5 4 27 27 H 1.09807 * 108.72846 * 161.19589 * 7 6 5 28 28 H 1.08680 * 110.36815 * 42.75535 * 7 6 5 29 29 H 1.08997 * 109.47016 * 30.15060 * 11 10 8 30 30 H 1.09000 * 109.47568 * 150.15819 * 11 10 8 31 31 H 0.97001 * 120.00186 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5224 0.0000 0.0000 3 1 1.8729 1.0436 0.0000 4 6 2.0753 -0.6864 -1.2535 5 8 1.4432 -1.9366 -1.4620 6 6 1.7652 -3.0075 -0.5895 7 6 0.9785 -2.8783 0.7172 8 6 1.6526 -1.8659 1.6090 9 8 1.8705 -2.1722 2.7728 10 7 2.0705 -0.6663 1.1912 11 6 3.1230 0.0165 1.9616 12 6 2.4898 0.8715 3.0289 13 1 1.4147 0.9051 3.1267 14 6 3.2829 1.6101 3.8813 15 7 2.7303 2.3558 4.8130 16 14 5.1424 1.5504 3.7136 17 1 5.5893 2.6129 2.7773 18 1 5.7666 1.7677 5.0433 19 1 5.5495 0.2230 3.1866 20 1 -0.3634 -1.0274 -0.0232 21 1 -0.3634 0.4936 0.9014 22 1 -0.3634 0.5338 -0.8781 23 1 1.9018 -0.0462 -2.1185 24 1 3.1479 -0.8420 -1.1334 25 1 2.8333 -2.9875 -0.3738 26 1 1.5126 -3.9518 -1.0720 27 1 0.9725 -3.8529 1.2230 28 1 -0.0512 -2.5972 0.5126 29 1 3.7714 -0.7254 2.4276 30 1 3.7118 0.6456 1.2941 31 1 3.2883 2.8757 5.4125 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:52 Heat of formation + Delta-G solvation = -100.499791 kcal Electronic energy + Delta-G solvation = -15110.546908 eV Core-core repulsion = 12584.324228 eV Total energy + Delta-G solvation = -2526.222680 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.37069 -38.81748 -36.73924 -34.82805 -32.96796 -32.38371 -29.35645 -27.43427 -25.68853 -24.01726 -22.48447 -19.68631 -19.13314 -17.98125 -17.83708 -17.21761 -16.73492 -15.82758 -15.72286 -15.31310 -14.83672 -14.58296 -14.21648 -13.77509 -13.45804 -13.25674 -12.95732 -12.72119 -12.62056 -12.42028 -12.13605 -12.04565 -11.78964 -11.40201 -10.89543 -10.83083 -10.55368 -9.40315 -8.34722 -6.39621 1.29021 1.34383 1.44534 1.61466 2.19208 2.29535 2.80738 2.98506 3.55159 3.89826 4.02316 4.08314 4.17370 4.24889 4.45393 4.62677 4.68183 4.75838 4.80187 4.87717 4.92808 4.97164 5.07991 5.29752 5.43722 5.59798 6.21852 6.38259 6.61004 6.73127 7.19268 7.33551 8.83037 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040196 B = 0.010107 C = 0.009866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.418565 B = 2769.624416 C = 2837.209535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.096 3.904 3 H 0.094 0.906 4 C 0.063 3.937 5 O -0.384 6.384 6 C 0.079 3.921 7 C -0.160 4.160 8 C 0.490 3.510 9 O -0.608 6.608 10 N -0.600 5.600 11 C 0.226 3.774 12 C -0.529 4.529 13 H 0.019 0.981 14 C 0.005 3.995 15 N -0.949 5.949 16 Si 0.953 3.047 17 H -0.247 1.247 18 H -0.283 1.283 19 H -0.255 1.255 20 H 0.070 0.930 21 H 0.028 0.972 22 H 0.102 0.898 23 H 0.139 0.861 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.139 0.861 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.016 0.984 30 H 0.053 0.947 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 -7.690 -17.066 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.006 4.006 3 H 0.112 0.888 4 C -0.014 4.014 5 O -0.302 6.302 6 C 0.002 3.998 7 C -0.200 4.200 8 C 0.280 3.720 9 O -0.491 6.491 10 N -0.331 5.331 11 C 0.104 3.896 12 C -0.568 4.568 13 H 0.038 0.962 14 C -0.193 4.193 15 N -0.589 5.589 16 Si 0.775 3.225 17 H -0.171 1.171 18 H -0.208 1.208 19 H -0.179 1.179 20 H 0.089 0.911 21 H 0.047 0.953 22 H 0.120 0.880 23 H 0.156 0.844 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.157 0.843 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.230 -7.739 -16.507 18.232 hybrid contribution 0.626 0.531 1.389 1.614 sum 0.396 -7.208 -15.117 16.752 Atomic orbital electron populations 1.21889 0.93370 1.03330 1.02337 1.22246 0.95813 0.98053 0.84527 0.88830 1.23038 0.96104 0.85166 0.97095 1.87076 1.69172 1.19370 1.54617 1.22490 0.97573 0.91561 0.88173 1.22676 1.02085 0.98097 0.97149 1.21749 0.78852 0.83312 0.88089 1.90954 1.57666 1.79739 1.20699 1.48099 1.39064 1.17663 1.28278 1.19532 0.87095 0.91889 0.91113 1.21496 0.93358 1.25816 1.16111 0.96218 1.25958 1.04896 0.94256 0.94146 1.70074 1.38012 1.30371 1.20478 0.85637 0.78275 0.80032 0.78518 1.17127 1.20829 1.17891 0.91105 0.95316 0.87979 0.84358 0.92847 0.93578 0.84338 0.86886 0.86601 0.96614 0.92920 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 8.88 71.73 0.64 -3.66 16 2 C 0.10 2.97 2.91 44.71 0.13 3.10 16 3 H 0.09 2.96 7.85 -1.80 -0.01 2.95 16 4 C 0.06 1.41 6.24 72.06 0.45 1.86 16 5 O -0.38 -8.47 9.42 -148.79 -1.40 -9.87 16 6 C 0.08 1.68 6.49 72.01 0.47 2.14 16 7 C -0.16 -4.44 5.36 29.91 0.16 -4.28 16 8 C 0.49 20.72 6.42 87.86 0.56 21.29 16 9 O -0.61 -33.12 16.53 -6.31 -0.10 -33.22 16 10 N -0.60 -25.03 2.38 -798.63 -1.90 -26.93 16 11 C 0.23 11.20 3.88 85.50 0.33 11.54 16 12 C -0.53 -32.31 9.80 25.60 0.25 -32.05 16 13 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 14 C 0.00 0.28 5.47 84.65 0.46 0.75 16 15 N -0.95 -61.69 13.96 21.45 0.30 -61.39 16 16 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 17 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 19 H -0.25 -11.47 6.54 99.48 0.65 -10.81 16 20 H 0.07 1.87 4.73 -2.39 -0.01 1.86 16 21 H 0.03 0.99 8.14 -2.38 -0.02 0.98 16 22 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.14 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.05 1.22 8.01 -2.36 -0.02 1.20 16 25 H 0.05 1.07 7.79 -2.39 -0.02 1.05 16 26 H 0.14 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.11 2.84 8.16 -1.96 -0.02 2.83 16 28 H 0.12 2.89 6.01 -2.56 -0.02 2.87 16 29 H 0.02 0.84 6.66 -2.39 -0.02 0.83 16 30 H 0.05 2.31 7.38 -2.39 -0.02 2.29 16 31 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -80.70 251.50 3.30 -77.40 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.07 Total: 6.53 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 3.46 Total: 0.69 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -1.60 Total: -88.32 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.51 Total: -43.09 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -80.70 3.30 -77.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.100 kcal (2) G-P(sol) polarization free energy of solvation -80.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds