Wall clock time and date at job start Mon Mar 30 2020 03:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46819 * 2 1 4 4 C 1.50701 * 109.47183 * 240.00052 * 2 1 3 5 5 H 1.07994 * 119.99943 * 239.99920 * 4 2 1 6 6 C 1.37873 * 119.99920 * 59.99547 * 4 2 1 7 7 N 1.31519 * 120.00281 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47311 * 60.00037 * 8 6 4 10 10 H 1.48501 * 109.46799 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46895 * 299.99875 * 8 6 4 12 12 N 1.46499 * 109.47297 * 119.99563 * 2 1 3 13 13 C 1.47204 * 120.01653 * 239.99987 * 12 2 1 14 14 C 1.53131 * 108.57404 * 109.84717 * 13 12 2 15 15 O 1.41711 * 110.54097 * 84.37893 * 14 13 12 16 16 C 1.41762 * 118.91225 * 291.43496 * 15 14 13 17 17 C 1.53235 * 110.34286 * 68.29920 * 16 15 14 18 18 C 1.33824 * 120.00962 * 59.98091 * 12 2 1 19 19 O 1.21284 * 120.09952 * 0.21958 * 18 12 2 20 20 H 1.08997 * 109.46837 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46704 * 299.99894 * 1 2 3 22 22 H 1.08990 * 109.47278 * 59.99765 * 1 2 3 23 23 H 0.96992 * 120.00059 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.61963 * 350.12119 * 13 12 2 25 25 H 1.09002 * 109.77403 * 229.66751 * 13 12 2 26 26 H 1.09002 * 109.25900 * 204.64412 * 14 13 12 27 27 H 1.08998 * 109.25401 * 324.11785 * 14 13 12 28 28 H 1.08994 * 109.35424 * 308.02106 * 16 15 14 29 29 H 1.09003 * 109.17356 * 188.46260 * 16 15 14 30 30 H 1.08995 * 109.68143 * 157.52854 * 17 16 15 31 31 H 1.09001 * 109.71024 * 36.98733 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8268 -0.4199 -5.2204 11 1 3.8064 -1.1208 -4.0082 12 7 2.0184 -0.6905 1.1962 13 6 2.8647 0.0246 2.1653 14 6 2.0564 0.2492 3.4464 15 8 2.1238 -0.8924 4.2834 16 6 1.4820 -2.0860 3.8675 17 6 2.1979 -2.6792 2.6494 18 6 1.6949 -1.9716 1.4085 19 8 1.0008 -2.5640 0.6096 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7094 1.1617 -3.4843 24 1 3.1655 0.9861 1.7491 25 1 3.7503 -0.5697 2.3907 26 1 2.4596 1.1102 3.9796 27 1 1.0160 0.4428 3.1856 28 1 0.4467 -1.8672 3.6061 29 1 1.5029 -2.8071 4.6846 30 1 1.9797 -3.7447 2.5783 31 1 3.2733 -2.5304 2.7465 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261084594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:04 Heat of formation + Delta-G solvation = -75.436929 kcal Electronic energy + Delta-G solvation = -15168.023387 eV Core-core repulsion = 12642.887514 eV Total energy + Delta-G solvation = -2525.135873 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.82415 -37.42296 -35.05398 -32.94179 -31.46169 -30.06582 -27.33501 -25.09516 -24.51008 -21.99818 -21.35423 -18.13333 -16.99860 -16.39465 -16.12077 -15.73150 -14.93855 -14.43043 -14.00205 -13.51793 -13.10742 -12.55423 -12.50236 -12.05560 -11.50527 -11.44644 -11.31040 -11.00268 -10.86079 -10.73519 -10.35125 -10.28633 -10.00764 -9.59124 -9.21384 -8.62329 -8.25695 -7.58401 -5.98964 -4.02163 3.35569 3.39007 3.43713 3.51362 3.81502 3.94864 4.49114 4.94863 5.21446 5.31763 5.35281 5.36200 5.36419 5.47540 5.77961 5.82101 5.99428 6.07528 6.19733 6.76884 6.98757 7.15216 7.22637 7.46803 7.75634 7.86535 8.11207 8.21000 8.59444 8.95432 9.19886 9.62302 11.06834 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047921 B = 0.009858 C = 0.009218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.152349 B = 2839.736481 C = 3036.841307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.270 3.730 3 H 0.042 0.958 4 C -0.501 4.501 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.279 1.279 12 N -0.600 5.600 13 C 0.075 3.925 14 C 0.049 3.951 15 O -0.394 6.394 16 C 0.079 3.921 17 C -0.182 4.182 18 C 0.503 3.497 19 O -0.526 6.526 20 H 0.051 0.949 21 H 0.002 0.998 22 H 0.090 0.910 23 H 0.261 0.739 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 -1.087 11.573 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.170 3.830 3 H 0.060 0.940 4 C -0.540 4.540 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.333 5.333 13 C -0.049 4.049 14 C -0.029 4.029 15 O -0.313 6.313 16 C 0.002 3.998 17 C -0.222 4.222 18 C 0.289 3.711 19 O -0.403 6.403 20 H 0.070 0.930 21 H 0.021 0.979 22 H 0.108 0.892 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.522 -1.257 11.131 11.483 hybrid contribution 0.253 -0.409 -1.169 1.264 sum 2.775 -1.666 9.962 10.475 Atomic orbital electron populations 1.22141 0.98043 1.01232 0.99826 1.18890 0.91516 0.91947 0.80624 0.94029 1.21226 1.30680 1.12025 0.90038 0.92550 1.24849 0.95222 0.95110 0.98891 1.69856 1.37157 1.23104 1.23622 0.86542 0.78899 0.79965 0.81915 1.20212 1.21308 1.20441 1.48441 1.49606 1.11167 1.24057 1.22398 0.93946 0.98950 0.89605 1.23011 1.00487 0.87643 0.91746 1.87007 1.76691 1.19933 1.47696 1.22266 0.95324 0.86214 0.95950 1.22802 1.02568 1.01843 0.95027 1.20221 0.81561 0.82357 0.86974 1.90685 1.37832 1.65196 1.46543 0.92997 0.97917 0.89165 0.92882 0.88912 0.90875 0.88109 0.92672 0.93135 0.88295 0.88375 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 8.89 37.16 0.33 -3.62 16 2 C 0.27 6.86 2.68 -69.08 -0.19 6.67 16 3 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 4 C -0.50 -14.30 7.58 -34.44 -0.26 -14.56 16 5 H 0.06 1.68 7.46 -52.49 -0.39 1.29 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.90 -25.88 11.32 55.43 0.63 -25.26 16 8 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 N -0.60 -12.70 2.44 -166.74 -0.41 -13.11 16 13 C 0.08 1.20 5.97 -3.59 -0.02 1.18 16 14 C 0.05 0.67 6.66 37.23 0.25 0.92 16 15 O -0.39 -5.59 10.26 -35.18 -0.36 -5.95 16 16 C 0.08 1.08 6.60 37.28 0.25 1.33 16 17 C -0.18 -2.83 5.64 -27.39 -0.15 -2.99 16 18 C 0.50 10.80 6.13 -11.04 -0.07 10.73 16 19 O -0.53 -13.72 14.19 5.55 0.08 -13.64 16 20 H 0.05 1.41 6.17 -51.93 -0.32 1.09 16 21 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 22 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.09 1.40 7.62 -51.93 -0.40 1.00 16 25 H 0.07 1.07 7.07 -51.93 -0.37 0.71 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.10 1.41 8.13 -51.93 -0.42 0.99 16 31 H 0.09 1.31 7.11 -51.93 -0.37 0.94 16 LS Contribution 250.47 15.07 3.77 3.77 Total: -1.00 -32.25 250.47 -5.48 -37.72 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.21 Total: -2.15 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 0.04 Total: 1.27 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.22 Total: -38.36 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.28 Total: -19.60 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.25 -5.48 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.713 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds