Wall clock time and date at job start Mon Mar 30 2020 03:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46819 * 2 1 4 4 C 1.50701 * 109.47183 * 240.00052 * 2 1 3 5 5 H 1.07994 * 119.99943 * 239.99920 * 4 2 1 6 6 C 1.37873 * 119.99920 * 59.99547 * 4 2 1 7 7 N 1.31519 * 120.00281 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47311 * 60.00037 * 8 6 4 10 10 H 1.48501 * 109.46799 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46895 * 299.99875 * 8 6 4 12 12 N 1.46499 * 109.47297 * 119.99563 * 2 1 3 13 13 C 1.47204 * 120.01653 * 239.99987 * 12 2 1 14 14 C 1.53131 * 108.57404 * 109.84717 * 13 12 2 15 15 O 1.41711 * 110.54097 * 84.37893 * 14 13 12 16 16 C 1.41762 * 118.91225 * 291.43496 * 15 14 13 17 17 C 1.53235 * 110.34286 * 68.29920 * 16 15 14 18 18 C 1.33824 * 120.00962 * 59.98091 * 12 2 1 19 19 O 1.21284 * 120.09952 * 0.21958 * 18 12 2 20 20 H 1.08997 * 109.46837 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46704 * 299.99894 * 1 2 3 22 22 H 1.08990 * 109.47278 * 59.99765 * 1 2 3 23 23 H 0.96992 * 120.00059 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.61963 * 350.12119 * 13 12 2 25 25 H 1.09002 * 109.77403 * 229.66751 * 13 12 2 26 26 H 1.09002 * 109.25900 * 204.64412 * 14 13 12 27 27 H 1.08998 * 109.25401 * 324.11785 * 14 13 12 28 28 H 1.08994 * 109.35424 * 308.02106 * 16 15 14 29 29 H 1.09003 * 109.17356 * 188.46260 * 16 15 14 30 30 H 1.08995 * 109.68143 * 157.52854 * 17 16 15 31 31 H 1.09001 * 109.71024 * 36.98733 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8268 -0.4199 -5.2204 11 1 3.8064 -1.1208 -4.0082 12 7 2.0184 -0.6905 1.1962 13 6 2.8647 0.0246 2.1653 14 6 2.0564 0.2492 3.4464 15 8 2.1238 -0.8924 4.2834 16 6 1.4820 -2.0860 3.8675 17 6 2.1979 -2.6792 2.6494 18 6 1.6949 -1.9716 1.4085 19 8 1.0008 -2.5640 0.6096 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7094 1.1617 -3.4843 24 1 3.1655 0.9861 1.7491 25 1 3.7503 -0.5697 2.3907 26 1 2.4596 1.1102 3.9796 27 1 1.0160 0.4428 3.1856 28 1 0.4467 -1.8672 3.6061 29 1 1.5029 -2.8071 4.6846 30 1 1.9797 -3.7447 2.5783 31 1 3.2733 -2.5304 2.7465 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261084594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:04 Heat of formation + Delta-G solvation = -98.133535 kcal Electronic energy + Delta-G solvation = -15169.007586 eV Core-core repulsion = 12642.887514 eV Total energy + Delta-G solvation = -2526.120072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.32016 -38.78842 -36.84196 -34.87271 -32.77968 -31.86560 -28.87116 -27.28029 -25.85218 -23.31780 -23.09739 -19.83019 -18.74680 -17.92487 -17.36988 -17.23847 -16.70891 -16.05556 -15.64275 -15.03115 -14.67779 -14.45704 -13.98116 -13.52018 -13.30054 -13.10324 -12.82235 -12.79825 -12.60302 -12.34642 -12.31707 -12.19712 -11.65775 -11.25216 -10.81086 -10.63278 -10.19569 -9.31788 -8.15462 -6.25757 1.34367 1.38357 1.45258 1.88738 2.31415 2.47847 2.76364 3.11756 3.61175 4.01637 4.17641 4.20388 4.21711 4.29825 4.57747 4.72040 4.75285 4.87237 4.90727 4.96098 5.02017 5.11333 5.29319 5.59155 5.80099 6.05081 6.16351 6.36571 6.72253 6.90814 7.35488 7.58624 8.88156 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047921 B = 0.009858 C = 0.009218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.152349 B = 2839.736481 C = 3036.841307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.272 3.728 3 H 0.035 0.965 4 C -0.518 4.518 5 H 0.035 0.965 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.268 1.268 12 N -0.605 5.605 13 C 0.069 3.931 14 C 0.055 3.945 15 O -0.391 6.391 16 C 0.082 3.918 17 C -0.167 4.167 18 C 0.489 3.511 19 O -0.586 6.586 20 H 0.027 0.973 21 H 0.025 0.975 22 H 0.066 0.934 23 H 0.264 0.736 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.139 0.861 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 -1.103 13.122 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.170 3.830 3 H 0.053 0.947 4 C -0.557 4.557 5 H 0.054 0.946 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.780 3.220 9 H -0.213 1.213 10 H -0.200 1.200 11 H -0.193 1.193 12 N -0.336 5.336 13 C -0.054 4.054 14 C -0.022 4.022 15 O -0.310 6.310 16 C 0.005 3.995 17 C -0.207 4.207 18 C 0.277 3.723 19 O -0.466 6.466 20 H 0.047 0.953 21 H 0.044 0.956 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.118 0.882 25 H 0.110 0.890 26 H 0.156 0.844 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.157 0.843 30 H 0.129 0.871 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.721 -1.245 12.723 13.315 hybrid contribution -0.109 -0.390 -1.622 1.671 sum 3.613 -1.635 11.102 11.788 Atomic orbital electron populations 1.21922 0.98600 0.99519 0.99721 1.18577 0.91086 0.91572 0.81724 0.94734 1.21402 1.30834 1.11563 0.91853 0.94623 1.25558 0.95494 0.95868 1.01458 1.69943 1.37539 1.23823 1.24279 0.85678 0.78946 0.78253 0.79120 1.21287 1.19996 1.19267 1.48463 1.49881 1.11594 1.23702 1.22738 0.94130 0.99093 0.89393 1.23016 0.99286 0.88814 0.91092 1.87040 1.76535 1.19975 1.47449 1.22398 0.94011 0.86818 0.96249 1.22776 1.03551 1.01870 0.92519 1.21327 0.80585 0.82253 0.88145 1.90649 1.40499 1.66478 1.49010 0.95345 0.95645 0.91498 0.92671 0.88181 0.89042 0.84376 0.94377 0.94673 0.84311 0.87118 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.30 8.89 71.98 0.64 -6.66 16 2 C 0.27 14.02 2.68 44.25 0.12 14.14 16 3 H 0.03 1.82 7.60 -2.39 -0.02 1.80 16 4 C -0.52 -30.17 7.58 25.60 0.19 -29.98 16 5 H 0.04 2.17 7.46 -2.91 -0.02 2.15 16 6 C 0.01 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -53.41 11.32 21.45 0.24 -53.17 16 8 Si 0.95 46.26 29.54 68.60 2.03 48.28 16 9 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 N -0.60 -25.36 2.44 -800.35 -1.95 -27.31 16 13 C 0.07 2.05 5.97 86.29 0.52 2.56 16 14 C 0.06 1.36 6.66 72.03 0.48 1.84 16 15 O -0.39 -9.62 10.26 -148.81 -1.53 -11.15 16 16 C 0.08 1.98 6.60 72.06 0.48 2.45 16 17 C -0.17 -4.81 5.64 30.16 0.17 -4.64 16 18 C 0.49 20.86 6.13 88.04 0.54 21.40 16 19 O -0.59 -31.38 14.19 -3.04 -0.04 -31.42 16 20 H 0.03 1.58 6.17 -2.39 -0.01 1.57 16 21 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 23 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 24 H 0.10 2.81 7.62 -2.39 -0.02 2.80 16 25 H 0.09 2.40 7.07 -2.39 -0.02 2.38 16 26 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.04 1.09 8.07 -2.39 -0.02 1.07 16 28 H 0.03 0.97 7.90 -2.39 -0.02 0.95 16 29 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.11 2.93 8.13 -2.39 -0.02 2.91 16 31 H 0.11 2.78 7.11 -2.39 -0.02 2.76 16 Total: -1.00 -71.21 250.47 3.44 -67.78 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.11 Total: 4.57 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 3.58 Total: 2.42 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -1.71 Total: -80.48 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.57 Total: -42.57 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -71.21 3.44 -67.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.358 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds