Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47043 * 2 1 4 4 C 1.50699 * 109.46696 * 119.99233 * 2 1 3 5 5 H 1.08003 * 120.00126 * 114.38123 * 4 2 1 6 6 C 1.37883 * 120.00481 * 294.37683 * 4 2 1 7 7 N 1.31509 * 120.00162 * 157.27330 * 6 4 2 8 8 Si 1.86805 * 119.99547 * 337.27453 * 6 4 2 9 9 H 1.48504 * 109.46706 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.46870 * 299.99750 * 8 6 4 11 11 H 1.48490 * 109.47091 * 59.99702 * 8 6 4 12 12 N 1.46496 * 109.47566 * 239.99614 * 2 1 3 13 13 C 1.47205 * 120.01272 * 119.72350 * 12 2 1 14 14 C 1.53645 * 108.30177 * 109.91343 * 13 12 2 15 15 O 1.41706 * 110.50639 * 84.48659 * 14 13 12 16 16 C 1.41751 * 118.91990 * 291.42868 * 15 14 13 17 17 C 1.53226 * 110.37772 * 68.23129 * 16 15 14 18 18 C 1.33819 * 120.00747 * 299.99716 * 12 2 1 19 19 O 1.21285 * 120.10282 * 0.19148 * 18 12 2 20 20 H 1.08994 * 109.46949 * 173.58337 * 1 2 3 21 21 H 1.08993 * 109.47678 * 293.58934 * 1 2 3 22 22 H 1.09004 * 109.46544 * 53.59057 * 1 2 3 23 23 H 0.97001 * 119.99916 * 354.90137 * 7 6 4 24 24 H 1.08993 * 109.62085 * 229.61299 * 13 12 2 25 25 H 1.09003 * 109.61784 * 350.16761 * 13 12 2 26 26 H 1.08993 * 109.34906 * 324.18311 * 14 13 12 27 27 H 1.09006 * 109.19654 * 204.68990 * 14 13 12 28 28 H 1.09008 * 109.31964 * 307.95819 * 16 15 14 29 29 H 1.09001 * 109.17031 * 188.41855 * 16 15 14 30 30 H 1.09001 * 109.68128 * 157.54060 * 17 16 15 31 31 H 1.08999 * 109.71113 * 37.01130 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.5762 -1.6383 1.1343 6 6 1.7974 -0.1754 2.4795 7 7 1.8151 -0.9514 3.5411 8 14 1.4540 1.6516 2.6635 9 1 1.2368 1.9724 4.0972 10 1 2.6132 2.4269 2.1534 11 1 0.2397 2.0077 1.8865 12 7 2.0184 -0.6906 -1.1961 13 6 2.8598 0.0262 -2.1683 14 6 4.2857 -0.5394 -2.0819 15 8 4.4085 -1.7007 -2.8846 16 6 3.7196 -2.8775 -2.4976 17 6 2.2068 -2.6826 -2.6436 18 6 1.6953 -1.9719 -1.4079 19 8 0.9953 -2.5622 -0.6126 20 1 -0.3633 -1.0212 -0.1148 21 1 -0.3634 0.4112 0.9417 22 1 -0.3632 0.6100 -0.8271 23 1 1.9196 -1.9103 3.4393 24 1 2.4652 -0.1223 -3.1734 25 1 2.8698 1.0897 -1.9295 26 1 4.5116 -0.7927 -1.0462 27 1 4.9920 0.2144 -2.4298 28 1 3.9548 -3.1079 -1.4584 29 1 4.0395 -3.7045 -3.1316 30 1 1.7190 -3.6528 -2.7375 31 1 1.9974 -2.0795 -3.5271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261084595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = -100.727250 kcal Electronic energy + Delta-G solvation = -15256.406331 eV Core-core repulsion = 12730.173788 eV Total energy + Delta-G solvation = -2526.232544 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.41182 -38.87224 -36.94568 -34.91057 -32.93007 -32.34595 -29.00281 -26.86702 -25.93139 -23.42230 -22.93747 -20.01993 -19.35067 -18.22934 -17.43795 -17.29136 -16.49057 -16.16418 -15.45197 -15.27907 -14.78054 -14.50408 -14.19335 -13.66941 -13.53264 -13.36268 -13.27047 -12.61853 -12.50974 -12.32411 -12.03083 -11.83559 -11.63671 -11.28122 -10.88208 -10.55335 -10.26279 -9.49749 -8.71175 -6.32716 1.45458 1.53999 1.70790 1.78756 2.29170 2.51571 2.69901 3.00075 3.52697 3.94614 4.09390 4.13942 4.16193 4.26215 4.48283 4.53312 4.65385 4.72183 4.76189 4.82726 4.88491 4.96184 4.98954 5.48930 5.71079 5.92495 6.01185 6.28935 6.56751 6.75741 7.35164 7.51740 8.58182 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038645 B = 0.011267 C = 0.010691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.368686 B = 2484.529163 C = 2618.485350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.246 3.754 3 H 0.060 0.940 4 C -0.593 4.593 5 H 0.000 1.000 6 C -0.024 4.024 7 N -0.934 5.934 8 Si 1.082 2.918 9 H -0.291 1.291 10 H -0.249 1.249 11 H -0.245 1.245 12 N -0.602 5.602 13 C 0.069 3.931 14 C 0.049 3.951 15 O -0.390 6.390 16 C 0.081 3.919 17 C -0.164 4.164 18 C 0.488 3.512 19 O -0.590 6.590 20 H 0.036 0.964 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.245 0.755 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.024 0.976 27 H 0.141 0.859 28 H 0.017 0.983 29 H 0.140 0.860 30 H 0.109 0.891 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 4.766 -16.248 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.143 3.857 3 H 0.078 0.922 4 C -0.631 4.631 5 H 0.018 0.982 6 C -0.222 4.222 7 N -0.569 5.569 8 Si 0.901 3.099 9 H -0.217 1.217 10 H -0.173 1.173 11 H -0.169 1.169 12 N -0.333 5.333 13 C -0.052 4.052 14 C -0.029 4.029 15 O -0.308 6.308 16 C 0.004 3.996 17 C -0.204 4.204 18 C 0.277 3.723 19 O -0.470 6.470 20 H 0.055 0.945 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.123 0.877 25 H 0.133 0.867 26 H 0.042 0.958 27 H 0.159 0.841 28 H 0.036 0.964 29 H 0.158 0.842 30 H 0.128 0.872 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.104 5.656 -14.879 16.218 hybrid contribution 0.013 -2.061 0.010 2.061 sum 3.117 3.595 -14.869 15.612 Atomic orbital electron populations 1.22372 0.98234 1.00717 1.00285 1.18966 0.91208 0.92791 0.82718 0.92216 1.22164 1.39136 1.08355 0.93431 0.98167 1.27393 0.92921 1.10202 0.91637 1.70964 1.47602 1.05271 1.33070 0.83641 0.79472 0.70045 0.76731 1.21722 1.17279 1.16883 1.48273 1.50378 1.11335 1.23345 1.22954 0.90400 0.98601 0.93288 1.23147 0.97375 0.87861 0.94485 1.87017 1.70859 1.19858 1.53075 1.22352 0.88927 0.88457 0.99861 1.22759 0.98688 1.03011 0.95920 1.21375 0.80271 0.82380 0.88308 1.90668 1.40443 1.66634 1.49294 0.94478 0.93383 0.92395 0.94608 0.87659 0.86672 0.95771 0.84138 0.96440 0.84214 0.87210 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.27 8.92 71.98 0.64 -6.63 16 2 C 0.25 11.57 2.28 44.25 0.10 11.67 16 3 H 0.06 2.50 6.17 -2.38 -0.01 2.49 16 4 C -0.59 -35.25 7.90 25.60 0.20 -35.04 16 5 H 0.00 -0.01 7.51 -2.91 -0.02 -0.03 16 6 C -0.02 -1.44 5.21 84.66 0.44 -1.00 16 7 N -0.93 -61.62 13.70 21.45 0.29 -61.33 16 8 Si 1.08 48.83 26.43 68.60 1.81 50.64 16 9 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 11 H -0.24 -9.75 6.11 99.48 0.61 -9.14 16 12 N -0.60 -24.05 2.43 -799.38 -1.95 -26.00 16 13 C 0.07 1.85 6.01 86.46 0.52 2.37 16 14 C 0.05 1.29 6.68 72.20 0.48 1.77 16 15 O -0.39 -10.33 10.27 -148.80 -1.53 -11.86 16 16 C 0.08 2.20 6.60 72.06 0.48 2.67 16 17 C -0.16 -4.72 5.64 30.16 0.17 -4.55 16 18 C 0.49 20.84 6.09 88.04 0.54 21.37 16 19 O -0.59 -32.37 14.07 -3.04 -0.04 -32.42 16 20 H 0.04 1.92 6.00 -2.39 -0.01 1.90 16 21 H 0.05 2.26 5.42 -2.39 -0.01 2.24 16 22 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 23 H 0.25 16.95 8.73 -92.71 -0.81 16.14 16 24 H 0.11 2.21 7.05 -2.39 -0.02 2.19 16 25 H 0.12 2.55 7.62 -2.39 -0.02 2.53 16 26 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 27 H 0.14 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.02 0.59 7.90 -2.38 -0.02 0.58 16 29 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.12 2.77 7.10 -2.39 -0.02 2.75 16 Total: -1.00 -80.53 246.68 3.14 -77.39 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.98 Total: 10.92 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 3.57 Total: -7.35 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -1.65 Total: -87.32 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.57 Total: -44.28 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 1.81 Total: 50.64 kcal Total: -80.53 3.14 -77.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.336 kcal (2) G-P(sol) polarization free energy of solvation -80.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds