Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.51846 * 2 1 4 4 C 1.53090 * 109.52216 * 239.87497 * 2 1 3 5 5 O 1.42902 * 109.41282 * 182.48120 * 4 2 1 6 6 C 1.42905 * 114.09583 * 61.16326 * 5 4 2 7 7 C 1.53096 * 109.41382 * 298.83698 * 6 5 4 8 8 C 1.53176 * 109.52182 * 120.18577 * 2 1 3 9 9 H 1.09005 * 109.54225 * 57.02232 * 8 2 1 10 10 C 1.50700 * 109.54631 * 296.75364 * 8 2 1 11 11 O 1.21294 * 119.99850 * 0.44991 * 10 8 2 12 12 N 1.34771 * 119.99954 * 180.44174 * 10 8 2 13 13 C 1.37097 * 120.00373 * 180.02562 * 12 10 8 14 14 H 1.08007 * 119.99284 * 0.02562 * 13 12 10 15 15 C 1.38944 * 120.00483 * 180.02562 * 13 12 10 16 16 N 1.31408 * 120.00148 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00032 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46867 * 90.00087 * 17 15 13 19 19 H 1.48500 * 109.47314 * 209.99989 * 17 15 13 20 20 H 1.48503 * 109.47070 * 330.00246 * 17 15 13 21 21 H 1.09004 * 109.47024 * 180.12540 * 1 2 3 22 22 H 1.09000 * 109.47352 * 300.12262 * 1 2 3 23 23 H 1.09006 * 109.47425 * 60.12694 * 1 2 3 24 24 H 1.09003 * 109.47962 * 62.50566 * 4 2 1 25 25 H 1.08998 * 109.49361 * 302.46941 * 4 2 1 26 26 H 1.08996 * 109.48276 * 178.85928 * 6 5 4 27 27 H 1.09001 * 109.49146 * 58.82628 * 6 5 4 28 28 H 1.08998 * 109.52300 * 177.51797 * 7 6 5 29 29 H 1.09004 * 109.51858 * 297.70524 * 7 6 5 30 30 H 0.97007 * 119.99980 * 0.02562 * 12 10 8 31 31 H 0.97000 * 120.00529 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7242 -1.2480 5 8 3.4694 -0.7735 -1.2167 6 6 4.0043 -1.4815 -0.0966 7 6 3.5716 -0.7877 1.1978 8 6 2.0419 -0.7259 1.2479 9 1 1.6367 -1.7375 1.2732 10 6 1.6078 0.0239 2.4810 11 8 0.9463 1.0350 2.3745 12 7 1.9545 -0.4291 3.7020 13 6 1.5592 0.2527 4.8239 14 1 0.9696 1.1527 4.7290 15 6 1.9171 -0.2140 6.0827 16 7 1.5378 0.4393 7.1580 17 14 2.9363 -1.7708 6.2467 18 1 4.3794 -1.4207 6.2394 19 1 2.5985 -2.4515 7.5226 20 1 2.6412 -2.6779 5.1085 21 1 -0.3633 -1.0277 0.0022 22 1 -0.3634 0.5157 0.8889 23 1 -0.3634 0.5119 -0.8911 24 1 1.7159 -0.1872 -2.1390 25 1 1.6432 -1.7385 -1.2689 26 1 5.0925 -1.4901 -0.1579 27 1 3.6317 -2.5058 -0.1021 28 1 3.9417 -1.3511 2.0543 29 1 3.9780 0.2234 1.2225 30 1 2.4838 -1.2375 3.7872 31 1 1.7879 0.1138 8.0368 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300865081.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -96.185383 kcal Electronic energy + Delta-G solvation = -14766.551308 eV Core-core repulsion = 12240.515714 eV Total energy + Delta-G solvation = -2526.035593 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.83391 -37.83738 -34.42654 -33.57114 -32.22381 -31.35777 -27.00221 -25.82013 -24.12281 -22.09460 -20.37856 -19.21563 -18.30218 -16.35233 -15.90285 -15.46960 -14.96841 -14.58913 -14.25989 -13.69369 -13.56313 -13.19623 -12.59165 -12.21744 -12.00358 -11.86714 -11.57434 -11.28637 -11.11163 -10.71762 -10.62873 -10.33230 -10.16316 -9.97766 -9.59500 -9.49522 -8.35527 -8.19170 -6.33654 -3.84854 2.99997 3.04184 3.12724 3.69407 3.95991 4.07679 4.54208 4.88301 4.96941 5.07875 5.23358 5.27794 5.36034 5.55476 5.60934 5.74027 5.80199 5.81582 6.01572 6.04053 6.07945 6.32301 6.37654 6.66150 6.85518 7.26826 7.54843 8.13189 8.56986 8.92554 9.40601 9.81026 10.79482 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041465 B = 0.009297 C = 0.007992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.110766 B = 3010.985455 C = 3502.774542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 H 0.085 0.915 4 C 0.065 3.935 5 O -0.386 6.386 6 C 0.063 3.937 7 C -0.149 4.149 8 C -0.100 4.100 9 H 0.082 0.918 10 C 0.457 3.543 11 O -0.571 6.571 12 N -0.588 5.588 13 C -0.306 4.306 14 H 0.120 0.880 15 C 0.042 3.958 16 N -0.881 5.881 17 Si 0.877 3.123 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.270 1.270 21 H 0.043 0.957 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.370 0.630 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 -7.069 -12.557 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.012 4.012 5 O -0.305 6.305 6 C -0.013 4.013 7 C -0.188 4.188 8 C -0.122 4.122 9 H 0.100 0.900 10 C 0.243 3.757 11 O -0.455 6.455 12 N -0.226 5.226 13 C -0.435 4.435 14 H 0.137 0.863 15 C -0.161 4.161 16 N -0.520 5.520 17 Si 0.704 3.296 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.195 1.195 21 H 0.062 0.938 22 H 0.108 0.892 23 H 0.066 0.934 24 H 0.110 0.890 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.203 0.797 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.548 -6.281 -12.508 14.439 hybrid contribution 0.633 -1.419 0.704 1.706 sum 4.181 -7.701 -11.804 14.701 Atomic orbital electron populations 1.21901 0.94119 1.01257 1.03595 1.21469 0.97000 1.00621 0.92806 0.89707 1.22736 0.80635 0.99488 0.98309 1.87891 1.20698 1.76485 1.45390 1.22572 0.98860 0.94365 0.85538 1.22233 0.95235 1.02879 0.98413 1.21312 0.95728 1.00092 0.95032 0.90008 1.19656 0.84919 0.87357 0.83719 1.90502 1.42323 1.26626 1.86025 1.42255 1.49065 1.25191 1.06056 1.19457 1.32195 1.09636 0.82180 0.86260 1.25040 0.97857 0.98084 0.95136 1.69618 1.45139 1.39322 0.97969 0.86707 0.81135 0.83225 0.78575 1.19529 1.20097 1.19509 0.93756 0.89171 0.93359 0.88975 0.93446 0.88907 0.93286 0.90753 0.90309 0.79712 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.92 37.16 0.33 -2.03 16 2 C -0.10 -1.58 2.05 -90.48 -0.19 -1.77 16 3 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 4 C 0.06 0.85 6.13 37.20 0.23 1.07 16 5 O -0.39 -5.47 10.77 -35.23 -0.38 -5.85 16 6 C 0.06 0.79 6.84 37.21 0.25 1.04 16 7 C -0.15 -2.21 5.29 -26.59 -0.14 -2.35 16 8 C -0.10 -1.70 2.11 -91.59 -0.19 -1.89 16 9 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 10 C 0.46 10.35 6.84 -10.99 -0.08 10.27 16 11 O -0.57 -15.00 13.44 5.54 0.07 -14.93 16 12 N -0.59 -14.03 5.00 -10.96 -0.05 -14.09 16 13 C -0.31 -8.65 10.16 -14.94 -0.15 -8.80 16 14 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 15 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 16 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 17 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.09 1.74 5.80 -51.93 -0.30 1.44 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.37 7.83 5.25 -40.82 -0.21 7.62 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 253.06 15.07 3.81 3.81 Total: -1.00 -31.36 253.06 -4.78 -36.15 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.27 Total: 8.62 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.03 Total: -3.40 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.72 Total: -39.04 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.30 Total: -20.78 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.36 -4.78 -36.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300865081.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.038 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds