Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.51846 * 2 1 4 4 C 1.53090 * 109.52216 * 239.87497 * 2 1 3 5 5 O 1.42902 * 109.41282 * 182.48120 * 4 2 1 6 6 C 1.42905 * 114.09583 * 61.16326 * 5 4 2 7 7 C 1.53096 * 109.41382 * 298.83698 * 6 5 4 8 8 C 1.53176 * 109.52182 * 120.18577 * 2 1 3 9 9 H 1.09005 * 109.54225 * 57.02232 * 8 2 1 10 10 C 1.50700 * 109.54631 * 296.75364 * 8 2 1 11 11 O 1.21294 * 119.99850 * 0.44991 * 10 8 2 12 12 N 1.34771 * 119.99954 * 180.44174 * 10 8 2 13 13 C 1.37097 * 120.00373 * 180.02562 * 12 10 8 14 14 H 1.08007 * 119.99284 * 0.02562 * 13 12 10 15 15 C 1.38944 * 120.00483 * 180.02562 * 13 12 10 16 16 N 1.31408 * 120.00148 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00032 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46867 * 90.00087 * 17 15 13 19 19 H 1.48500 * 109.47314 * 209.99989 * 17 15 13 20 20 H 1.48503 * 109.47070 * 330.00246 * 17 15 13 21 21 H 1.09004 * 109.47024 * 180.12540 * 1 2 3 22 22 H 1.09000 * 109.47352 * 300.12262 * 1 2 3 23 23 H 1.09006 * 109.47425 * 60.12694 * 1 2 3 24 24 H 1.09003 * 109.47962 * 62.50566 * 4 2 1 25 25 H 1.08998 * 109.49361 * 302.46941 * 4 2 1 26 26 H 1.08996 * 109.48276 * 178.85928 * 6 5 4 27 27 H 1.09001 * 109.49146 * 58.82628 * 6 5 4 28 28 H 1.08998 * 109.52300 * 177.51797 * 7 6 5 29 29 H 1.09004 * 109.51858 * 297.70524 * 7 6 5 30 30 H 0.97007 * 119.99980 * 0.02562 * 12 10 8 31 31 H 0.97000 * 120.00529 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7242 -1.2480 5 8 3.4694 -0.7735 -1.2167 6 6 4.0043 -1.4815 -0.0966 7 6 3.5716 -0.7877 1.1978 8 6 2.0419 -0.7259 1.2479 9 1 1.6367 -1.7375 1.2732 10 6 1.6078 0.0239 2.4810 11 8 0.9463 1.0350 2.3745 12 7 1.9545 -0.4291 3.7020 13 6 1.5592 0.2527 4.8239 14 1 0.9696 1.1527 4.7290 15 6 1.9171 -0.2140 6.0827 16 7 1.5378 0.4393 7.1580 17 14 2.9363 -1.7708 6.2467 18 1 4.3794 -1.4207 6.2394 19 1 2.5985 -2.4515 7.5226 20 1 2.6412 -2.6779 5.1085 21 1 -0.3633 -1.0277 0.0022 22 1 -0.3634 0.5157 0.8889 23 1 -0.3634 0.5119 -0.8911 24 1 1.7159 -0.1872 -2.1390 25 1 1.6432 -1.7385 -1.2689 26 1 5.0925 -1.4901 -0.1579 27 1 3.6317 -2.5058 -0.1021 28 1 3.9417 -1.3511 2.0543 29 1 3.9780 0.2234 1.2225 30 1 2.4838 -1.2375 3.7872 31 1 1.7879 0.1138 8.0368 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300865081.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -119.801709 kcal Electronic energy + Delta-G solvation = -14767.575388 eV Core-core repulsion = 12240.515714 eV Total energy + Delta-G solvation = -2527.059674 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.25455 -39.36200 -36.23936 -35.07103 -33.95386 -32.88120 -28.39605 -27.19500 -25.79798 -23.22159 -21.84894 -21.02251 -20.10093 -17.94412 -17.05150 -16.98642 -16.48025 -15.98932 -15.51803 -15.26677 -15.07501 -14.89026 -14.42025 -13.80117 -13.40642 -13.03064 -12.99405 -12.77156 -12.45818 -12.35893 -12.02086 -11.92046 -11.54498 -11.46337 -11.30301 -10.72306 -10.26607 -10.07644 -8.44353 -6.05266 1.26744 1.32368 1.41436 1.90891 2.20049 2.84153 3.04473 3.11187 3.65942 3.83498 3.90127 3.99125 4.31843 4.35059 4.53047 4.58792 4.66116 4.71668 4.78604 4.86169 4.96909 5.14155 5.17976 5.39571 5.51078 5.53027 5.93430 6.29519 6.55002 6.84813 7.36146 7.92895 8.73347 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041465 B = 0.009297 C = 0.007992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.110766 B = 3010.985455 C = 3502.774542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.052 0.948 4 C 0.072 3.928 5 O -0.400 6.400 6 C 0.066 3.934 7 C -0.149 4.149 8 C -0.093 4.093 9 H 0.112 0.888 10 C 0.455 3.545 11 O -0.616 6.616 12 N -0.588 5.588 13 C -0.330 4.330 14 H 0.055 0.945 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.961 3.039 18 H -0.255 1.255 19 H -0.273 1.273 20 H -0.231 1.231 21 H 0.065 0.935 22 H 0.043 0.957 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.388 0.612 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -10.597 -14.401 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 H 0.071 0.929 4 C -0.004 4.004 5 O -0.319 6.319 6 C -0.011 4.011 7 C -0.187 4.187 8 C -0.114 4.114 9 H 0.130 0.870 10 C 0.243 3.757 11 O -0.501 6.501 12 N -0.229 5.229 13 C -0.459 4.459 14 H 0.073 0.927 15 C -0.213 4.213 16 N -0.574 5.574 17 Si 0.780 3.220 18 H -0.179 1.179 19 H -0.198 1.198 20 H -0.155 1.155 21 H 0.084 0.916 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.126 0.874 25 H 0.091 0.909 26 H 0.133 0.867 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.224 0.776 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.302 -9.812 -14.384 18.201 hybrid contribution -0.005 -0.169 1.260 1.271 sum 5.297 -9.981 -13.124 17.318 Atomic orbital electron populations 1.21817 0.94193 1.02203 1.02330 1.21491 0.97005 0.99363 0.94145 0.92910 1.22748 0.80257 1.00566 0.96824 1.87891 1.21136 1.76992 1.45920 1.22726 1.00258 0.94878 0.83191 1.22277 0.92986 1.02449 1.01017 1.21365 0.97765 1.00439 0.91870 0.87046 1.20907 0.82962 0.86784 0.85032 1.90496 1.43817 1.28865 1.86944 1.42076 1.49838 1.25734 1.05220 1.19027 1.33201 1.08993 0.84713 0.92698 1.26117 0.98851 1.02612 0.93737 1.69799 1.46742 1.41931 0.98919 0.85426 0.79047 0.77630 0.79869 1.17907 1.19794 1.15465 0.91595 0.93810 0.91266 0.87354 0.90878 0.86727 0.90626 0.89258 0.92555 0.77629 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 8.92 71.98 0.64 -3.84 16 2 C -0.10 -3.04 2.05 -10.70 -0.02 -3.07 16 3 H 0.05 1.91 8.03 -2.39 -0.02 1.89 16 4 C 0.07 1.61 6.13 72.01 0.44 2.05 16 5 O -0.40 -9.81 10.77 -148.98 -1.60 -11.42 16 6 C 0.07 1.33 6.84 72.01 0.49 1.82 16 7 C -0.15 -3.98 5.29 30.69 0.16 -3.82 16 8 C -0.09 -2.97 2.11 -11.42 -0.02 -3.00 16 9 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 10 C 0.45 20.92 6.84 87.66 0.60 21.52 16 11 O -0.62 -34.28 13.44 -3.07 -0.04 -34.32 16 12 N -0.59 -28.18 5.00 -306.99 -1.53 -29.71 16 13 C -0.33 -19.54 10.16 84.04 0.85 -18.69 16 14 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 15 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 16 N -0.93 -56.56 13.96 21.66 0.30 -56.26 16 17 Si 0.96 38.72 27.74 68.60 1.90 40.62 16 18 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 20 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 21 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 22 H 0.04 1.74 5.80 -2.39 -0.01 1.73 16 23 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 24 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 2.11 7.67 -2.39 -0.02 2.09 16 29 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.39 15.48 5.25 -92.70 -0.49 14.99 16 31 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -74.39 253.06 3.22 -71.17 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.58 Total: 27.26 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 3.61 Total: -7.36 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -1.23 Total: -85.97 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -1.65 Total: -45.74 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.90 Total: 40.62 kcal Total: -74.39 3.22 -71.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300865081.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.627 kcal (2) G-P(sol) polarization free energy of solvation -74.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds