Wall clock time and date at job start Mon Mar 30 2020 02:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52175 * 2 1 4 4 C 1.53087 * 109.51874 * 120.19195 * 2 1 3 5 5 O 1.42905 * 109.41402 * 177.51331 * 4 2 1 6 6 C 1.42901 * 114.09819 * 298.84526 * 5 4 2 7 7 C 1.53088 * 109.41767 * 61.15307 * 6 5 4 8 8 C 1.53176 * 109.16576 * 302.39290 * 7 6 5 9 9 H 1.08998 * 109.61592 * 297.07043 * 8 7 6 10 10 C 1.50694 * 109.54623 * 176.84562 * 8 7 6 11 11 O 1.21297 * 120.00199 * 240.44457 * 10 8 7 12 12 N 1.34784 * 119.99988 * 60.44578 * 10 8 7 13 13 C 1.37096 * 119.99735 * 179.72439 * 12 10 8 14 14 H 1.07998 * 120.00618 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99464 * 179.97438 * 13 12 10 16 16 N 1.31407 * 120.00058 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99669 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47319 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46816 * 120.00520 * 17 15 13 20 20 H 1.48501 * 109.47099 * 240.00173 * 17 15 13 21 21 H 1.09003 * 109.47289 * 180.11979 * 1 2 3 22 22 H 1.08996 * 109.47590 * 300.12689 * 1 2 3 23 23 H 1.09004 * 109.47225 * 60.12303 * 1 2 3 24 24 H 1.08999 * 109.48124 * 297.49626 * 4 2 1 25 25 H 1.08997 * 109.48636 * 57.53543 * 4 2 1 26 26 H 1.08996 * 109.48092 * 181.13936 * 6 5 4 27 27 H 1.09006 * 109.47909 * 301.16877 * 6 5 4 28 28 H 1.09002 * 109.52375 * 182.48322 * 7 6 5 29 29 H 1.09000 * 109.52116 * 62.30140 * 7 6 5 30 30 H 0.97000 * 119.99339 * 0.02562 * 12 10 8 31 31 H 0.97000 * 119.99610 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0415 -0.7256 1.2472 5 8 3.4693 -0.7751 1.2159 6 6 4.0043 -1.4817 0.0949 7 6 3.5715 -0.7865 -1.1986 8 6 2.0418 -0.7246 -1.2488 9 1 1.6354 -1.7356 -1.2760 10 6 1.6078 0.0266 -2.4809 11 8 0.9532 1.0421 -2.3730 12 7 1.9469 -0.4298 -3.7029 13 6 1.5472 0.2505 -4.8240 14 1 0.9610 1.1524 -4.7281 15 6 1.8974 -0.2198 -6.0838 16 7 2.6111 -1.3170 -6.2005 17 14 1.3534 0.7076 -7.6114 18 1 0.5660 1.9014 -7.2116 19 1 2.5483 1.1370 -8.3814 20 1 0.5128 -0.1790 -8.4556 21 1 -0.3634 -1.0277 0.0021 22 1 -0.3634 0.5158 0.8888 23 1 -0.3634 0.5119 -0.8911 24 1 1.7158 -0.1898 2.1387 25 1 1.6431 -1.7400 1.2667 26 1 5.0924 -1.4905 0.1563 27 1 3.6315 -2.5060 0.0993 28 1 3.9417 -1.3488 -2.0558 29 1 3.9780 0.2247 -1.2222 30 1 2.4701 -1.2421 -3.7891 31 1 2.8552 -1.6455 -7.0800 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300865088.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:39 Heat of formation + Delta-G solvation = -103.558086 kcal Electronic energy + Delta-G solvation = -14704.865123 eV Core-core repulsion = 12178.509825 eV Total energy + Delta-G solvation = -2526.355298 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.68769 -37.66571 -34.34127 -33.45736 -32.07335 -30.92520 -26.84742 -25.71835 -24.24454 -21.96791 -20.40795 -18.92006 -17.89168 -16.33483 -15.82003 -15.34901 -14.73525 -14.36505 -14.24415 -13.76985 -13.46912 -13.26011 -12.29816 -12.05552 -11.78410 -11.56368 -11.43906 -11.15952 -10.98032 -10.62802 -10.35445 -10.30932 -10.19445 -9.97472 -9.52903 -9.40245 -8.21304 -7.97145 -6.43642 -3.84241 3.14685 3.25532 3.32735 3.87231 4.05887 4.16352 4.83557 5.01270 5.07886 5.19821 5.33011 5.45037 5.47234 5.68452 5.76022 5.84365 5.91195 5.95703 6.14028 6.18555 6.27029 6.45178 6.55990 6.76603 6.92599 7.36802 7.53772 8.04861 8.59595 9.16196 9.53513 10.04915 10.74076 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050312 B = 0.008024 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.398772 B = 3488.652238 C = 3888.060753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 H 0.083 0.917 4 C 0.065 3.935 5 O -0.387 6.387 6 C 0.063 3.937 7 C -0.147 4.147 8 C -0.097 4.097 9 H 0.080 0.920 10 C 0.448 3.552 11 O -0.590 6.590 12 N -0.561 5.561 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.901 5.901 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.392 0.608 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -2.698 9.710 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.011 4.011 5 O -0.306 6.306 6 C -0.013 4.013 7 C -0.185 4.185 8 C -0.118 4.118 9 H 0.098 0.902 10 C 0.234 3.766 11 O -0.476 6.476 12 N -0.196 5.196 13 C -0.430 4.430 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.542 5.542 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.225 0.775 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.891 -2.029 9.729 9.979 hybrid contribution -0.056 -0.309 -1.213 1.253 sum 0.835 -2.338 8.516 8.871 Atomic orbital electron populations 1.21887 0.94298 1.01146 1.03422 1.21461 0.96855 1.00549 0.93015 0.89898 1.22721 0.80721 0.99436 0.98268 1.87877 1.20643 1.76632 1.45473 1.22582 0.98767 0.94407 0.85582 1.22200 0.95221 1.02636 0.98445 1.21255 0.95708 0.99954 0.94917 0.90197 1.19765 0.85220 0.87461 0.84176 1.90460 1.43830 1.26966 1.86318 1.41919 1.47846 1.25362 1.04476 1.19777 1.31378 1.08589 0.83240 0.87873 1.25269 0.96863 0.96508 0.99305 1.69617 1.37815 1.21730 1.25069 0.85810 0.78361 0.79405 0.80836 1.19230 1.20728 1.20744 0.93811 0.93535 0.89257 0.89147 0.93497 0.88996 0.93295 0.90267 0.90710 0.77462 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.92 37.16 0.33 -2.11 16 2 C -0.10 -1.66 2.05 -90.48 -0.19 -1.85 16 3 H 0.08 1.55 8.02 -51.93 -0.42 1.13 16 4 C 0.07 0.90 6.13 37.20 0.23 1.13 16 5 O -0.39 -5.85 10.77 -35.23 -0.38 -6.23 16 6 C 0.06 0.86 6.84 37.20 0.25 1.11 16 7 C -0.15 -2.37 5.30 -26.59 -0.14 -2.51 16 8 C -0.10 -1.75 2.11 -91.59 -0.19 -1.94 16 9 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 10 C 0.45 10.56 6.82 -10.98 -0.07 10.48 16 11 O -0.59 -15.73 13.46 5.54 0.07 -15.66 16 12 N -0.56 -14.23 5.20 -10.96 -0.06 -14.29 16 13 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 14 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 17 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.09 1.78 5.81 -51.93 -0.30 1.47 16 24 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.26 7.70 -51.93 -0.40 0.86 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.39 9.55 7.42 -40.82 -0.30 9.25 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 256.24 15.07 3.86 3.86 Total: -1.00 -30.17 256.24 -5.13 -35.30 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.31 Total: 8.45 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.02 Total: -3.71 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.67 Total: -38.04 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.30 Total: -21.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.17 -5.13 -35.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300865088.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.254 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds