Wall clock time and date at job start Mon Mar 30 2020 02:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52175 * 2 1 4 4 C 1.53087 * 109.51874 * 120.19195 * 2 1 3 5 5 O 1.42905 * 109.41402 * 177.51331 * 4 2 1 6 6 C 1.42901 * 114.09819 * 298.84526 * 5 4 2 7 7 C 1.53088 * 109.41767 * 61.15307 * 6 5 4 8 8 C 1.53176 * 109.16576 * 302.39290 * 7 6 5 9 9 H 1.08998 * 109.61592 * 297.07043 * 8 7 6 10 10 C 1.50694 * 109.54623 * 176.84562 * 8 7 6 11 11 O 1.21297 * 120.00199 * 240.44457 * 10 8 7 12 12 N 1.34784 * 119.99988 * 60.44578 * 10 8 7 13 13 C 1.37096 * 119.99735 * 179.72439 * 12 10 8 14 14 H 1.07998 * 120.00618 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99464 * 179.97438 * 13 12 10 16 16 N 1.31407 * 120.00058 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99669 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47319 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46816 * 120.00520 * 17 15 13 20 20 H 1.48501 * 109.47099 * 240.00173 * 17 15 13 21 21 H 1.09003 * 109.47289 * 180.11979 * 1 2 3 22 22 H 1.08996 * 109.47590 * 300.12689 * 1 2 3 23 23 H 1.09004 * 109.47225 * 60.12303 * 1 2 3 24 24 H 1.08999 * 109.48124 * 297.49626 * 4 2 1 25 25 H 1.08997 * 109.48636 * 57.53543 * 4 2 1 26 26 H 1.08996 * 109.48092 * 181.13936 * 6 5 4 27 27 H 1.09006 * 109.47909 * 301.16877 * 6 5 4 28 28 H 1.09002 * 109.52375 * 182.48322 * 7 6 5 29 29 H 1.09000 * 109.52116 * 62.30140 * 7 6 5 30 30 H 0.97000 * 119.99339 * 0.02562 * 12 10 8 31 31 H 0.97000 * 119.99610 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0415 -0.7256 1.2472 5 8 3.4693 -0.7751 1.2159 6 6 4.0043 -1.4817 0.0949 7 6 3.5715 -0.7865 -1.1986 8 6 2.0418 -0.7246 -1.2488 9 1 1.6354 -1.7356 -1.2760 10 6 1.6078 0.0266 -2.4809 11 8 0.9532 1.0421 -2.3730 12 7 1.9469 -0.4298 -3.7029 13 6 1.5472 0.2505 -4.8240 14 1 0.9610 1.1524 -4.7281 15 6 1.8974 -0.2198 -6.0838 16 7 2.6111 -1.3170 -6.2005 17 14 1.3534 0.7076 -7.6114 18 1 0.5660 1.9014 -7.2116 19 1 2.5483 1.1370 -8.3814 20 1 0.5128 -0.1790 -8.4556 21 1 -0.3634 -1.0277 0.0021 22 1 -0.3634 0.5158 0.8888 23 1 -0.3634 0.5119 -0.8911 24 1 1.7158 -0.1898 2.1387 25 1 1.6431 -1.7400 1.2667 26 1 5.0924 -1.4905 0.1563 27 1 3.6315 -2.5060 0.0993 28 1 3.9417 -1.3488 -2.0558 29 1 3.9780 0.2247 -1.2222 30 1 2.4701 -1.2421 -3.7891 31 1 2.8552 -1.6455 -7.0800 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300865088.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:39 Heat of formation + Delta-G solvation = -124.790456 kcal Electronic energy + Delta-G solvation = -14705.785828 eV Core-core repulsion = 12178.509825 eV Total energy + Delta-G solvation = -2527.276002 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.16726 -39.28025 -36.18652 -35.02544 -33.65792 -32.65643 -28.29374 -27.19246 -25.94101 -23.21213 -21.93011 -20.61293 -19.87405 -17.97233 -16.99599 -16.90997 -16.38906 -15.95767 -15.72669 -15.32985 -15.04627 -14.86756 -13.94434 -13.55034 -13.33779 -12.99883 -12.96598 -12.76656 -12.44737 -12.33802 -12.13754 -11.92216 -11.55087 -11.43217 -11.29160 -10.70200 -10.04543 -9.99502 -8.49253 -5.97968 1.34173 1.39648 1.53750 2.01655 2.27728 2.97378 3.16345 3.19159 3.69977 3.86559 3.99925 4.02170 4.31231 4.41776 4.54908 4.63151 4.67055 4.73770 4.79237 4.87227 4.97044 5.13899 5.20027 5.38267 5.41256 5.53896 5.98352 6.28000 6.57066 7.10041 7.53778 8.09361 8.68294 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050312 B = 0.008024 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.398772 B = 3488.652238 C = 3888.060753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.054 0.946 4 C 0.071 3.929 5 O -0.399 6.399 6 C 0.068 3.932 7 C -0.143 4.143 8 C -0.091 4.091 9 H 0.100 0.900 10 C 0.444 3.556 11 O -0.626 6.626 12 N -0.570 5.570 13 C -0.335 4.335 14 H 0.078 0.922 15 C -0.012 4.012 16 N -0.919 5.919 17 Si 0.992 3.008 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.269 1.269 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.395 0.605 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.500 -3.926 10.518 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.072 0.928 4 C -0.005 4.005 5 O -0.318 6.318 6 C -0.009 4.009 7 C -0.182 4.182 8 C -0.112 4.112 9 H 0.118 0.882 10 C 0.232 3.768 11 O -0.513 6.513 12 N -0.206 5.206 13 C -0.465 4.465 14 H 0.096 0.904 15 C -0.212 4.212 16 N -0.560 5.560 17 Si 0.816 3.184 18 H -0.199 1.199 19 H -0.195 1.195 20 H -0.195 1.195 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.064 0.936 24 H 0.129 0.871 25 H 0.088 0.912 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.230 0.770 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.259 -3.278 10.550 11.119 hybrid contribution -0.181 0.093 -1.441 1.455 sum 1.078 -3.185 9.109 9.710 Atomic orbital electron populations 1.21799 0.94058 1.02030 1.02449 1.21475 0.97106 0.99286 0.93953 0.92789 1.22767 0.80223 1.00489 0.97035 1.87877 1.21218 1.77017 1.45704 1.22686 1.00144 0.94766 0.83292 1.22183 0.93408 1.01983 1.00577 1.21283 0.97348 1.00067 0.92531 0.88186 1.20822 0.83670 0.87086 0.85253 1.90442 1.45062 1.28749 1.87075 1.41975 1.48439 1.25544 1.04677 1.19717 1.32927 1.08880 0.84980 0.90426 1.26039 0.96439 0.97225 1.01512 1.69671 1.37826 1.22317 1.26162 0.84883 0.78265 0.78030 0.77231 1.19911 1.19542 1.19456 0.91951 0.91118 0.93556 0.87087 0.91181 0.86843 0.91000 0.90195 0.92815 0.77050 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 8.92 71.98 0.64 -3.97 16 2 C -0.10 -3.20 2.05 -10.70 -0.02 -3.22 16 3 H 0.05 2.04 8.02 -2.39 -0.02 2.02 16 4 C 0.07 1.74 6.13 72.01 0.44 2.19 16 5 O -0.40 -10.81 10.77 -148.98 -1.60 -12.42 16 6 C 0.07 1.62 6.84 72.01 0.49 2.11 16 7 C -0.14 -4.47 5.30 30.68 0.16 -4.31 16 8 C -0.09 -3.23 2.11 -11.42 -0.02 -3.26 16 9 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 10 C 0.44 21.50 6.82 87.65 0.60 22.09 16 11 O -0.63 -34.85 13.46 -3.08 -0.04 -34.89 16 12 N -0.57 -29.72 5.20 -306.97 -1.59 -31.31 16 13 C -0.34 -19.28 9.68 84.04 0.81 -18.47 16 14 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 15 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 16 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 17 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.87 5.81 -2.38 -0.01 1.86 16 24 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.08 2.46 7.70 -2.39 -0.02 2.45 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.40 19.59 7.42 -92.71 -0.69 18.90 16 31 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -66.24 256.24 3.08 -63.17 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.44 Total: 26.66 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 3.57 Total: -7.03 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.31 Total: -80.71 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -1.65 Total: -47.31 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -66.24 3.08 -63.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300865088.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.624 kcal (2) G-P(sol) polarization free energy of solvation -66.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds