Wall clock time and date at job start Mon Mar 30 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20760 * 119.99561 * 2 1 4 4 C 1.50701 * 120.00288 * 179.97438 * 2 1 3 5 5 C 1.52996 * 109.46817 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.71155 * 53.28303 * 5 4 2 7 7 C 1.53297 * 109.67897 * 173.81128 * 5 4 2 8 8 O 1.42961 * 109.22258 * 172.02456 * 7 5 4 9 9 C 1.42959 * 114.16892 * 297.41880 * 8 7 5 10 10 C 1.53304 * 109.22111 * 62.58299 * 9 8 7 11 11 N 1.47148 * 108.38110 * 307.69824 * 10 9 8 12 12 C 1.36938 * 120.98065 * 230.55825 * 11 10 9 13 13 H 1.08002 * 120.00086 * 149.15071 * 12 11 10 14 14 C 1.38810 * 119.99801 * 329.14464 * 12 11 10 15 15 N 1.31622 * 120.00361 * 348.97170 * 14 12 11 16 16 Si 1.86806 * 119.99867 * 168.96678 * 14 12 11 17 17 H 1.48501 * 109.47165 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47145 * 120.00356 * 16 14 12 19 19 H 1.48503 * 109.46847 * 240.00434 * 16 14 12 20 20 H 1.09006 * 109.47340 * 239.99879 * 1 2 3 21 21 H 1.08997 * 109.47812 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46894 * 120.00784 * 1 2 3 23 23 H 1.08998 * 109.46644 * 60.00185 * 4 2 1 24 24 H 1.08994 * 109.46850 * 300.00096 * 4 2 1 25 25 H 1.08997 * 109.51542 * 291.95473 * 7 5 4 26 26 H 1.09008 * 109.51161 * 52.10268 * 7 5 4 27 27 H 1.08992 * 109.51545 * 302.65977 * 9 8 7 28 28 H 1.09004 * 109.55712 * 182.52886 * 9 8 7 29 29 H 1.08991 * 109.68245 * 187.97427 * 10 9 8 30 30 H 1.09001 * 109.71040 * 67.43536 * 10 9 8 31 31 H 0.96996 * 120.00239 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0253 0.0011 6 1 4.0137 -0.3548 0.8236 7 6 4.5345 -2.3418 0.1573 8 8 5.9304 -2.0957 -0.0292 9 6 6.2711 -1.6150 -1.3317 10 6 5.5903 -0.2613 -1.5641 11 7 4.1547 -0.4085 -1.2767 12 6 3.2094 0.0156 -2.1721 13 1 2.2584 -0.4925 -2.2347 14 6 3.4734 1.0986 -2.9993 15 7 4.5312 1.8508 -2.7812 16 14 2.3275 1.4884 -4.4221 17 1 1.2201 0.4994 -4.4511 18 1 1.7676 2.8527 -4.2474 19 1 3.0834 1.4232 -5.6987 20 1 -0.3634 -0.5139 0.8900 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3633 -0.5140 -0.8899 23 1 1.9972 -1.8770 -0.8892 24 1 1.9972 -1.8762 0.8908 25 1 4.3662 -2.7458 1.1555 26 1 4.1880 -3.0569 -0.5889 27 1 5.9310 -2.3274 -2.0832 28 1 7.3522 -1.4962 -1.4056 29 1 5.7275 0.0454 -2.6009 30 1 6.0229 0.4867 -0.8997 31 1 4.7155 2.6078 -3.3590 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306292453.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:36 Heat of formation + Delta-G solvation = -54.112459 kcal Electronic energy + Delta-G solvation = -15306.543925 eV Core-core repulsion = 12782.332750 eV Total energy + Delta-G solvation = -2524.211175 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.03292 -37.70535 -34.42617 -32.38137 -30.54215 -29.79252 -27.15055 -26.22437 -23.29328 -21.92566 -19.54545 -18.68724 -16.58959 -15.78684 -15.55823 -14.57778 -14.50496 -14.34796 -14.14030 -13.44122 -13.42311 -12.87687 -12.50566 -11.79921 -11.76171 -11.38304 -11.05911 -10.93292 -10.72781 -10.60203 -10.23719 -10.11685 -9.89852 -9.54535 -8.96065 -8.58030 -8.38479 -6.50656 -5.70049 -3.16409 3.01252 3.37550 3.42580 3.46141 4.48370 4.60941 4.85405 5.29916 5.49870 5.58784 5.71529 5.77608 5.82427 5.92816 6.01475 6.11659 6.16966 6.24154 6.26654 6.45752 6.65355 6.73258 6.97436 7.22374 7.65217 7.75609 7.98713 8.48901 8.58343 9.24191 9.87199 10.47387 11.38779 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023683 B = 0.016856 C = 0.011049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.017755 B = 1660.712615 C = 2533.521687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.344 3.656 3 O -0.405 6.405 4 C -0.157 4.157 5 C 0.144 3.856 6 H 0.038 0.962 7 C 0.053 3.947 8 O -0.396 6.396 9 C 0.036 3.964 10 C 0.146 3.854 11 N -0.582 5.582 12 C -0.243 4.243 13 H 0.061 0.939 14 C 0.012 3.988 15 N -0.898 5.898 16 Si 0.894 3.106 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.289 1.289 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.026 0.974 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 -7.692 4.191 9.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.215 3.785 3 O -0.274 6.274 4 C -0.195 4.195 5 C 0.037 3.963 6 H 0.055 0.945 7 C -0.025 4.025 8 O -0.314 6.314 9 C -0.042 4.042 10 C 0.020 3.980 11 N -0.307 5.307 12 C -0.372 4.372 13 H 0.078 0.922 14 C -0.187 4.187 15 N -0.542 5.542 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.216 1.216 20 H 0.097 0.903 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.808 -6.981 4.232 9.008 hybrid contribution -0.904 0.300 -1.065 1.429 sum -4.712 -6.681 3.167 8.767 Atomic orbital electron populations 1.22307 0.96507 1.03851 1.03150 1.24011 0.90482 0.90902 0.73153 1.90512 1.71124 1.34298 1.31494 1.22047 0.96838 0.97899 1.02704 1.20982 0.90921 0.93112 0.91331 0.94457 1.23004 0.82546 0.97193 0.99791 1.87770 1.23717 1.86378 1.33582 1.23348 0.99006 0.98116 0.83683 1.21367 0.83290 0.91145 1.02186 1.43960 1.01652 1.70833 1.14262 1.18887 0.97539 1.08423 1.12364 0.92151 1.25074 0.97790 0.95360 1.00504 1.69975 1.28194 1.17567 1.38470 0.86353 0.80539 0.78065 0.82625 1.20399 1.21651 1.21598 0.90343 0.90889 0.90013 0.88758 0.90228 0.90379 0.93908 0.94242 0.90372 0.89061 0.95548 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 10.26 36.00 0.37 -2.53 16 2 C 0.34 6.69 5.54 -29.04 -0.16 6.53 16 3 O -0.41 -10.18 14.92 6.00 0.09 -10.09 16 4 C -0.16 -2.77 4.66 -27.88 -0.13 -2.90 16 5 C 0.14 3.08 2.66 -67.42 -0.18 2.90 16 6 H 0.04 0.90 7.90 -51.93 -0.41 0.49 16 7 C 0.05 0.99 6.29 37.31 0.23 1.23 16 8 O -0.40 -8.24 10.74 -35.23 -0.38 -8.62 16 9 C 0.04 0.75 6.99 37.31 0.26 1.01 16 10 C 0.15 3.64 5.38 -3.53 -0.02 3.62 16 11 N -0.58 -14.84 2.91 -164.30 -0.48 -15.32 16 12 C -0.24 -6.56 6.51 -15.06 -0.10 -6.66 16 13 H 0.06 1.57 5.62 -52.49 -0.30 1.28 16 14 C 0.01 0.34 5.05 -17.43 -0.09 0.25 16 15 N -0.90 -26.90 11.13 55.49 0.62 -26.28 16 16 Si 0.89 22.11 29.57 -169.99 -5.03 17.08 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 22 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.09 1.64 7.16 -51.93 -0.37 1.27 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.09 2.46 6.31 -51.93 -0.33 2.14 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 252.46 15.07 3.80 3.80 Total: -1.00 -32.94 252.46 -5.52 -38.47 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.34 Total: -2.50 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 0.19 Total: 3.46 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.14 Total: -41.60 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.29 Total: -18.71 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.94 -5.52 -38.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306292453.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.643 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds