Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47133 * 2 1 4 4 C 1.50698 * 109.47178 * 239.99506 * 2 1 3 5 5 O 1.20829 * 119.99862 * 239.99920 * 4 2 1 6 6 O 1.34224 * 119.99813 * 60.00102 * 4 2 1 7 7 N 1.46909 * 109.46817 * 119.99778 * 2 1 3 8 8 C 1.48567 * 110.99818 * 300.12406 * 7 2 1 9 9 C 1.54375 * 104.59257 * 200.96083 * 8 7 2 10 10 C 1.54268 * 105.06300 * 23.85503 * 9 8 7 11 11 H 1.08990 * 110.32386 * 241.00457 * 10 9 8 12 12 C 1.50697 * 110.32583 * 118.89095 * 10 9 8 13 13 H 1.07991 * 120.00449 * 241.17959 * 12 10 9 14 14 C 1.37885 * 119.99686 * 61.45790 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 10 17 17 H 1.48493 * 109.47326 * 90.00142 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99892 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99603 * 16 14 12 20 20 C 1.48555 * 110.99738 * 184.70917 * 7 2 1 21 21 H 1.08998 * 109.47391 * 300.00506 * 1 2 3 22 22 H 1.09002 * 109.47062 * 60.00383 * 1 2 3 23 23 H 1.08992 * 109.47437 * 180.02562 * 1 2 3 24 24 H 0.96700 * 116.99832 * 179.97438 * 6 4 2 25 25 H 1.09000 * 110.40732 * 82.18301 * 8 7 2 26 26 H 1.09003 * 110.41031 * 319.73902 * 8 7 2 27 27 H 1.08994 * 110.32421 * 264.95751 * 9 8 7 28 28 H 1.08996 * 110.32346 * 142.74610 * 9 8 7 29 29 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 30 30 H 1.09003 * 110.41868 * 40.25755 * 20 7 2 31 31 H 1.09008 * 110.41200 * 277.81871 * 20 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1194 6 8 1.7081 -0.2520 -2.4495 7 7 2.0196 -0.6925 1.1996 8 6 1.5407 -0.0205 2.4350 9 6 2.5218 -0.4818 3.5340 10 6 3.8110 -0.8726 2.7822 11 1 4.0402 -1.9255 2.9458 12 6 4.9619 -0.0109 3.2337 13 1 5.4714 0.6245 2.5246 14 6 5.3681 -0.0382 4.5511 15 7 4.7477 -0.8121 5.4146 16 14 6.7997 1.0241 5.1091 17 1 6.2911 2.3470 5.5524 18 1 7.4990 0.3591 6.2379 19 1 7.7470 1.2107 3.9809 20 6 3.5002 -0.6145 1.2922 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 2.0541 -0.7408 -3.2087 25 1 0.5261 -0.3400 2.6726 26 1 1.5819 1.0626 2.3189 27 1 2.1174 -1.3434 4.0651 28 1 2.7216 0.3332 4.2295 29 1 5.0332 -0.8310 6.3415 30 1 3.8481 0.3756 0.9973 31 1 3.9610 -1.3813 0.6693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306586578.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = -88.813090 kcal Electronic energy + Delta-G solvation = -14665.048474 eV Core-core repulsion = 12139.332567 eV Total energy + Delta-G solvation = -2525.715907 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.22832 -37.95441 -35.83873 -33.85917 -31.84154 -28.41263 -28.22434 -24.62928 -24.25280 -21.28771 -19.83051 -19.28405 -17.82475 -16.55082 -16.19449 -15.41386 -15.21374 -14.60562 -14.15871 -13.41656 -13.25375 -12.48024 -12.21501 -12.08440 -11.67269 -11.54006 -11.39004 -11.02757 -10.87087 -10.63780 -10.49469 -10.28615 -10.01784 -9.68694 -9.22439 -8.71714 -8.36639 -7.90106 -6.00307 -4.04205 2.44634 3.09455 3.30302 3.37413 3.40775 4.40421 4.56151 5.09895 5.17372 5.32568 5.43127 5.67899 5.80340 5.89395 6.02423 6.15356 6.23763 6.39680 6.53958 6.63901 6.97254 7.13368 7.17656 7.48832 7.57138 7.70105 7.90534 8.02435 8.14419 8.47816 8.98747 9.59595 11.08856 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048757 B = 0.007917 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.133226 B = 3536.066726 C = 3801.179657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.080 3.920 3 H 0.075 0.925 4 C 0.480 3.520 5 O -0.491 6.491 6 O -0.523 6.523 7 N -0.499 5.499 8 C 0.034 3.966 9 C -0.091 4.091 10 C 0.049 3.951 11 H 0.035 0.965 12 C -0.516 4.516 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.887 5.887 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.036 3.964 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.405 0.595 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.260 0.740 30 H 0.031 0.969 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 3.046 -10.198 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.092 0.908 4 C 0.320 3.680 5 O -0.376 6.376 6 O -0.335 6.335 7 N -0.225 5.225 8 C -0.093 4.093 9 C -0.130 4.130 10 C 0.030 3.970 11 H 0.053 0.947 12 C -0.554 4.554 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.090 4.090 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.263 0.737 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.069 2.370 -9.684 12.826 hybrid contribution 1.338 1.108 -0.125 1.742 sum -6.732 3.478 -9.809 12.394 Atomic orbital electron populations 1.21774 0.91696 1.03295 1.02847 1.21372 0.97411 0.96133 0.88106 0.90790 1.23461 0.77331 0.82921 0.84279 1.90719 1.34618 1.25516 1.86739 1.84521 1.72778 1.59333 1.16897 1.65394 1.09818 1.48152 0.99182 1.23249 0.99497 0.95760 0.90785 1.22207 0.94820 1.00466 0.95500 1.19369 0.92957 0.97521 0.87186 0.94717 1.21200 1.15303 1.24694 0.94246 0.92776 1.24969 0.96608 0.95535 0.96844 1.69990 1.40771 1.38300 1.03419 0.86633 0.82790 0.80455 0.78352 1.20759 1.21201 1.19964 1.23458 0.84985 0.99225 1.01362 0.90972 0.91420 0.91437 0.73677 0.91550 0.94695 0.93402 0.91228 0.93020 0.95090 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.98 37.16 0.33 -1.39 16 2 C 0.08 1.27 2.36 -68.86 -0.16 1.11 16 3 H 0.07 1.13 7.97 -51.93 -0.41 0.71 16 4 C 0.48 7.59 7.39 36.00 0.27 7.86 16 5 O -0.49 -9.53 15.19 -18.75 -0.28 -9.82 16 6 O -0.52 -6.13 13.33 -39.24 -0.52 -6.65 16 7 N -0.50 -9.79 4.95 -223.39 -1.10 -10.90 16 8 C 0.03 0.65 5.34 -2.18 -0.01 0.64 16 9 C -0.09 -2.15 5.75 -25.35 -0.15 -2.30 16 10 C 0.05 1.26 2.99 -90.39 -0.27 0.99 16 11 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.52 -14.32 8.37 -34.44 -0.29 -14.61 16 13 H 0.05 1.49 7.58 -52.49 -0.40 1.09 16 14 C 0.06 1.74 5.09 -17.82 -0.09 1.65 16 15 N -0.89 -25.57 12.34 55.43 0.68 -24.88 16 16 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.04 0.82 5.18 -2.18 -0.01 0.81 16 21 H 0.07 0.84 6.94 -51.93 -0.36 0.48 16 22 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.41 2.97 9.10 45.56 0.41 3.38 16 25 H 0.07 1.12 7.67 -51.93 -0.40 0.72 16 26 H 0.03 0.63 7.97 -51.93 -0.41 0.22 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.77 7.23 -51.93 -0.38 1.39 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.69 7.47 -51.93 -0.39 0.30 16 31 H 0.08 1.80 6.59 -51.92 -0.34 1.45 16 LS Contribution 257.47 15.07 3.88 3.88 Total: -1.00 -31.28 257.47 -6.25 -37.53 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -3.50 Total: -0.23 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.38 Total: -5.25 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.42 Total: -35.78 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.81 Total: -16.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.28 -6.25 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306586578.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.281 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds