Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47133 * 2 1 4 4 C 1.50698 * 109.47178 * 239.99506 * 2 1 3 5 5 O 1.20829 * 119.99862 * 239.99920 * 4 2 1 6 6 O 1.34224 * 119.99813 * 60.00102 * 4 2 1 7 7 N 1.46909 * 109.46817 * 119.99778 * 2 1 3 8 8 C 1.48567 * 110.99818 * 300.12406 * 7 2 1 9 9 C 1.54375 * 104.59257 * 200.96083 * 8 7 2 10 10 C 1.54268 * 105.06300 * 23.85503 * 9 8 7 11 11 H 1.08990 * 110.32386 * 241.00457 * 10 9 8 12 12 C 1.50697 * 110.32583 * 118.89095 * 10 9 8 13 13 H 1.07991 * 120.00449 * 241.17959 * 12 10 9 14 14 C 1.37885 * 119.99686 * 61.45790 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 10 17 17 H 1.48493 * 109.47326 * 90.00142 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99892 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99603 * 16 14 12 20 20 C 1.48555 * 110.99738 * 184.70917 * 7 2 1 21 21 H 1.08998 * 109.47391 * 300.00506 * 1 2 3 22 22 H 1.09002 * 109.47062 * 60.00383 * 1 2 3 23 23 H 1.08992 * 109.47437 * 180.02562 * 1 2 3 24 24 H 0.96700 * 116.99832 * 179.97438 * 6 4 2 25 25 H 1.09000 * 110.40732 * 82.18301 * 8 7 2 26 26 H 1.09003 * 110.41031 * 319.73902 * 8 7 2 27 27 H 1.08994 * 110.32421 * 264.95751 * 9 8 7 28 28 H 1.08996 * 110.32346 * 142.74610 * 9 8 7 29 29 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 30 30 H 1.09003 * 110.41868 * 40.25755 * 20 7 2 31 31 H 1.09008 * 110.41200 * 277.81871 * 20 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1194 6 8 1.7081 -0.2520 -2.4495 7 7 2.0196 -0.6925 1.1996 8 6 1.5407 -0.0205 2.4350 9 6 2.5218 -0.4818 3.5340 10 6 3.8110 -0.8726 2.7822 11 1 4.0402 -1.9255 2.9458 12 6 4.9619 -0.0109 3.2337 13 1 5.4714 0.6245 2.5246 14 6 5.3681 -0.0382 4.5511 15 7 4.7477 -0.8121 5.4146 16 14 6.7997 1.0241 5.1091 17 1 6.2911 2.3470 5.5524 18 1 7.4990 0.3591 6.2379 19 1 7.7470 1.2107 3.9809 20 6 3.5002 -0.6145 1.2922 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 2.0541 -0.7408 -3.2087 25 1 0.5261 -0.3400 2.6726 26 1 1.5819 1.0626 2.3189 27 1 2.1174 -1.3434 4.0651 28 1 2.7216 0.3332 4.2295 29 1 5.0332 -0.8310 6.3415 30 1 3.8481 0.3756 0.9973 31 1 3.9610 -1.3813 0.6693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306586578.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = -112.054097 kcal Electronic energy + Delta-G solvation = -14666.056279 eV Core-core repulsion = 12139.332567 eV Total energy + Delta-G solvation = -2526.723713 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.49193 -39.51363 -37.02010 -35.60320 -33.62203 -30.05883 -29.96681 -26.27465 -25.82681 -22.75829 -21.35117 -21.08732 -19.00934 -18.32933 -17.73537 -16.85881 -16.66661 -16.47979 -15.78421 -14.83811 -14.61540 -14.26599 -13.69043 -13.32345 -13.18017 -13.12177 -12.86592 -12.62420 -12.52727 -12.40838 -12.19764 -12.03794 -11.67536 -11.33037 -11.12528 -10.79563 -10.48351 -9.43457 -8.14110 -6.25815 1.23550 1.40454 1.41685 1.52010 1.98144 2.41677 3.09892 3.16422 3.94310 3.98593 4.12374 4.34222 4.41778 4.52101 4.56437 4.77378 4.86991 4.92587 5.03960 5.21815 5.27209 5.33927 5.60241 5.63359 5.69701 5.88269 5.93298 6.09247 6.38805 6.84371 7.05841 7.41845 8.94964 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048757 B = 0.007917 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.133226 B = 3536.066726 C = 3801.179657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.072 3.928 3 H 0.088 0.912 4 C 0.486 3.514 5 O -0.536 6.536 6 O -0.506 6.506 7 N -0.510 5.510 8 C 0.047 3.953 9 C -0.085 4.085 10 C 0.039 3.961 11 H -0.009 1.009 12 C -0.535 4.535 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.916 5.916 16 Si 0.957 3.043 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.054 3.946 21 H 0.083 0.917 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.427 0.573 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.262 0.738 30 H 0.031 0.969 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 4.694 -11.276 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.038 4.038 3 H 0.105 0.895 4 C 0.328 3.672 5 O -0.425 6.425 6 O -0.319 6.319 7 N -0.236 5.236 8 C -0.079 4.079 9 C -0.123 4.123 10 C 0.020 3.980 11 H 0.010 0.990 12 C -0.574 4.574 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.555 5.555 16 Si 0.782 3.218 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.074 4.074 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.081 0.919 24 H 0.288 0.712 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.089 4.035 -10.804 14.684 hybrid contribution 1.625 0.571 0.128 1.727 sum -7.464 4.606 -10.676 13.816 Atomic orbital electron populations 1.21783 0.88641 1.03612 1.04783 1.21570 0.99698 0.96092 0.86417 0.89481 1.23458 0.76280 0.82025 0.85402 1.90721 1.36721 1.27564 1.87511 1.84453 1.72080 1.58959 1.16405 1.65285 1.07558 1.49698 1.01049 1.23142 0.99393 0.96613 0.88790 1.21981 0.95038 0.98988 0.96324 1.19337 0.93899 0.94699 0.90107 0.99037 1.21491 1.16165 1.25045 0.94649 0.92969 1.25771 0.99188 0.96739 0.96868 1.70116 1.42167 1.39532 1.03688 0.85573 0.79436 0.78926 0.77828 1.19632 1.20886 1.19491 1.23082 0.87416 0.98489 0.98408 0.89809 0.88765 0.91904 0.71156 0.88562 0.93016 0.94986 0.93500 0.92908 0.95035 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.98 71.98 0.65 -2.10 16 2 C 0.07 2.09 2.36 44.17 0.10 2.19 16 3 H 0.09 2.36 7.97 -2.39 -0.02 2.34 16 4 C 0.49 14.41 7.39 71.24 0.53 14.93 16 5 O -0.54 -20.58 15.19 21.95 0.33 -20.25 16 6 O -0.51 -10.21 13.33 -51.36 -0.68 -10.89 16 7 N -0.51 -19.42 4.95 -860.69 -4.26 -23.67 16 8 C 0.05 1.73 5.34 86.45 0.46 2.19 16 9 C -0.08 -4.05 5.75 31.49 0.18 -3.87 16 10 C 0.04 2.07 2.99 -10.64 -0.03 2.04 16 11 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 12 C -0.54 -30.35 8.37 25.60 0.21 -30.13 16 13 H 0.05 2.90 7.58 -2.92 -0.02 2.88 16 14 C 0.01 0.77 5.09 84.66 0.43 1.20 16 15 N -0.92 -54.05 12.34 21.45 0.26 -53.78 16 16 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 C 0.05 2.44 5.18 86.45 0.45 2.89 16 21 H 0.08 1.59 6.94 -2.39 -0.02 1.57 16 22 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.43 4.94 9.10 -74.06 -0.67 4.27 16 25 H 0.10 2.97 7.67 -2.39 -0.02 2.95 16 26 H 0.05 1.73 7.97 -2.39 -0.02 1.71 16 27 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 2.42 7.23 -2.39 -0.02 2.40 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.03 1.41 7.47 -2.39 -0.02 1.39 16 31 H 0.06 2.90 6.59 -2.38 -0.02 2.89 16 Total: -1.00 -69.00 257.47 1.12 -67.89 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.45 Total: 5.36 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 2.98 Total: -10.67 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -3.99 Total: -77.46 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.35 Total: -31.14 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.00 1.12 -67.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306586578.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.167 kcal (2) G-P(sol) polarization free energy of solvation -69.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds