Wall clock time and date at job start Mon Mar 30 2020 02:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58697 * 2 1 4 4 C 1.53194 * 109.58067 * 120.27972 * 2 1 3 5 5 C 1.53357 * 109.15089 * 65.28391 * 4 2 1 6 6 C 1.53042 * 109.60571 * 61.28309 * 5 4 2 7 7 H 1.09007 * 109.49580 * 58.57879 * 6 5 4 8 8 C 1.50697 * 109.49957 * 178.67573 * 6 5 4 9 9 O 1.20829 * 119.99489 * 359.83906 * 8 6 5 10 10 O 1.34227 * 120.00364 * 179.83849 * 8 6 5 11 11 C 1.53194 * 109.31337 * 298.62746 * 6 5 4 12 12 N 1.46924 * 109.58942 * 239.71232 * 2 1 3 13 13 C 1.36933 * 120.63050 * 113.80205 * 12 2 1 14 14 H 1.08006 * 120.00075 * 27.72504 * 13 12 2 15 15 C 1.38812 * 120.00242 * 207.73431 * 13 12 2 16 16 N 1.31620 * 119.99785 * 17.37864 * 15 13 12 17 17 Si 1.86796 * 119.99917 * 197.38378 * 15 13 12 18 18 H 1.48503 * 109.47163 * 89.99629 * 17 15 13 19 19 H 1.48501 * 109.47151 * 209.99459 * 17 15 13 20 20 H 1.48502 * 109.47269 * 329.99254 * 17 15 13 21 21 H 1.08998 * 109.47343 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47061 * 60.00422 * 1 2 3 23 23 H 1.08997 * 109.47534 * 299.99913 * 1 2 3 24 24 H 1.09006 * 109.49741 * 185.10238 * 4 2 1 25 25 H 1.08995 * 109.50031 * 305.20253 * 4 2 1 26 26 H 1.08997 * 109.42982 * 301.24370 * 5 4 2 27 27 H 1.09000 * 109.40683 * 181.31222 * 5 4 2 28 28 H 0.96701 * 117.00045 * 180.02562 * 10 8 6 29 29 H 1.08993 * 109.58722 * 294.84880 * 11 6 5 30 30 H 1.09006 * 109.70112 * 174.48928 * 11 6 5 31 31 H 0.97002 * 119.99415 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 1.6413 -2.2056 1.1675 6 6 2.2800 -2.8463 -0.0669 7 1 3.3640 -2.7474 -0.0084 8 6 1.9098 -4.3060 -0.1243 9 8 1.2096 -4.7859 0.7355 10 8 2.3580 -5.0730 -1.1306 11 6 1.7692 -2.1394 -1.3263 12 7 2.0226 -0.6981 -1.1953 13 6 2.7045 -0.0183 -2.1689 14 1 3.2701 0.8661 -1.9148 15 6 2.6688 -0.4656 -3.4825 16 7 1.7354 -1.3113 -3.8645 17 14 3.9456 0.1325 -4.7078 18 1 5.1155 -0.7819 -4.6897 19 1 3.3537 0.1520 -6.0696 20 1 4.3825 1.5028 -4.3383 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8899 24 1 3.1296 -0.6487 1.2923 25 1 1.6073 -0.2757 2.1372 26 1 0.5564 -2.2829 1.0965 27 1 1.9844 -2.7226 2.0637 28 1 2.0938 -6.0032 -1.1248 29 1 0.6987 -2.3138 -1.4345 30 1 2.2925 -2.5243 -2.2016 31 1 1.7107 -1.6241 -4.7824 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306625737.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:31 Heat of formation + Delta-G solvation = -103.973867 kcal Electronic energy + Delta-G solvation = -15079.969941 eV Core-core repulsion = 12553.596614 eV Total energy + Delta-G solvation = -2526.373327 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.45658 -39.29182 -37.09914 -35.02050 -33.39601 -31.82747 -28.84145 -26.58338 -24.96965 -23.92918 -21.91504 -19.93076 -19.01644 -18.69526 -17.46573 -16.95004 -16.35016 -15.93631 -15.54438 -14.84072 -14.48300 -14.13605 -14.08535 -13.63901 -13.10385 -12.89893 -12.86323 -12.59493 -12.51971 -12.24851 -11.96633 -11.93182 -11.66753 -11.45250 -11.28442 -11.00775 -10.51996 -8.69400 -7.86100 -5.31113 1.19732 1.50317 1.51998 1.59903 2.22913 2.53953 3.29626 3.63375 3.89262 4.05977 4.12596 4.37873 4.49939 4.60270 4.72120 4.78546 4.91323 4.97950 5.14495 5.19249 5.25610 5.31906 5.43224 5.54815 5.61723 5.70051 5.77323 6.41451 7.05062 7.15085 7.86116 8.38517 9.20459 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028196 B = 0.012467 C = 0.009663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.795334 B = 2245.436727 C = 2896.908162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.064 0.936 4 C -0.116 4.116 5 C -0.089 4.089 6 C -0.104 4.104 7 H 0.107 0.893 8 C 0.496 3.504 9 O -0.548 6.548 10 O -0.512 6.512 11 C 0.198 3.802 12 N -0.598 5.598 13 C -0.261 4.261 14 H 0.071 0.929 15 C -0.047 4.047 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.285 1.285 19 H -0.298 1.298 20 H -0.268 1.268 21 H 0.037 0.963 22 H 0.026 0.974 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.423 0.577 29 H -0.004 1.004 30 H 0.067 0.933 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -2.417 8.019 8.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.082 0.918 4 C -0.155 4.155 5 C -0.127 4.127 6 C -0.125 4.125 7 H 0.125 0.875 8 C 0.340 3.660 9 O -0.439 6.439 10 O -0.324 6.324 11 C 0.072 3.928 12 N -0.320 5.320 13 C -0.391 4.391 14 H 0.089 0.911 15 C -0.243 4.243 16 N -0.578 5.578 17 Si 0.793 3.207 18 H -0.212 1.212 19 H -0.225 1.225 20 H -0.193 1.193 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.284 0.716 29 H 0.014 0.986 30 H 0.085 0.915 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.488 -2.165 8.075 8.491 hybrid contribution 0.124 -0.593 -1.144 1.294 sum 1.612 -2.758 6.931 7.632 Atomic orbital electron populations 1.22152 0.97999 1.00449 1.00481 1.20859 0.92421 0.95484 0.86751 0.91770 1.21973 1.01213 0.94112 0.98183 1.21362 1.00142 0.96122 0.95047 1.21816 1.03446 0.86286 1.00989 0.87543 1.23664 0.75198 0.89951 0.77219 1.90624 1.37369 1.75633 1.40288 1.84614 1.71087 1.28157 1.48568 1.20318 0.95725 0.83819 0.92974 1.44307 1.64270 1.03144 1.20268 1.19514 1.22117 1.10203 0.87301 0.91108 1.25772 0.99355 1.00599 0.98541 1.70169 1.33274 1.37378 1.16986 0.85307 0.78944 0.78446 0.77985 1.21185 1.22511 1.19270 0.94357 0.95458 0.90663 0.91763 0.88975 0.92408 0.90801 0.71625 0.98594 0.91493 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 9.02 71.98 0.65 -4.97 16 2 C 0.15 5.88 3.28 44.98 0.15 6.02 16 3 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 4 C -0.12 -3.63 5.58 30.78 0.17 -3.45 16 5 C -0.09 -2.96 4.26 30.73 0.13 -2.83 16 6 C -0.10 -3.95 2.78 -11.46 -0.03 -3.98 16 7 H 0.11 3.90 8.14 -2.38 -0.02 3.89 16 8 C 0.50 17.86 7.63 71.23 0.54 18.40 16 9 O -0.55 -20.97 16.74 21.96 0.37 -20.60 16 10 O -0.51 -16.14 13.35 -51.39 -0.69 -16.83 16 11 C 0.20 9.40 4.11 86.36 0.36 9.75 16 12 N -0.60 -28.83 2.70 -675.22 -1.83 -30.65 16 13 C -0.26 -13.89 9.58 84.03 0.81 -13.09 16 14 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 15 C -0.05 -2.56 4.91 84.86 0.42 -2.15 16 16 N -0.93 -54.30 11.19 21.65 0.24 -54.06 16 17 Si 0.96 44.05 29.59 68.60 2.03 46.08 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 H 0.04 1.48 5.72 -2.39 -0.01 1.46 16 22 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.06 2.03 6.48 -2.39 -0.02 2.02 16 27 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 28 H 0.42 8.58 9.10 -74.06 -0.67 7.90 16 29 H 0.00 -0.21 7.49 -2.39 -0.02 -0.22 16 30 H 0.07 3.61 6.03 -2.38 -0.01 3.60 16 31 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -64.51 253.79 3.77 -60.73 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.46 Total: 11.62 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 3.19 Total: 3.71 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.58 Total: -84.71 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.32 Total: -37.43 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -64.51 3.77 -60.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306625737.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.239 kcal (2) G-P(sol) polarization free energy of solvation -64.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds